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Proline rotamers Below is a list of kinemages and PDB files, one of each for each amino acid type, which show sidechain rotamer conformations. Click on the downward-pointing arrow in the column to download the PDB (with hydrogens added by Reduce) or a kinemage containing the rotamers for that amino acid. If desired, you can also download a compressed tar file containing all 20 kinemages or PDBs from the links given at the bottom of the table. Clicking on the rightmost column arrow will cause a new browser window to open and display the kinemage using MageJava (your browser must be java-capable). Most of the kins allow you to animate through each rotamer. The PDB files were used for making O and XtalView rotamer files, and may conceivably have other uses. Each structure is in idealized Engh and Huber geometry.

Rotamer for amino acid: Download: View in
JavaMage
coordinate
file
kinemage
file
  ALA   alanine (only one structure) download arrow download arrow display javamage
  ARG   arginine rotamers download arrow download arrow display javamage
  ASN   asparagine rotamers download arrow download arrow display javamage
  ASP   aspartic acid rotamers download arrow download arrow display javamage
  CYS   cysteine rotamers download arrow download arrow display javamage
  GLN   glutamine rotamers download arrow download arrow display javamage
  GLU   glutamic acid rotamers download arrow download arrow display javamage
  HIS   histidine rotamers download arrow download arrow display javamage
  ILE   isoleucine rotamers download arrow download arrow display javamage
  LEU   leucine rotamers download arrow download arrow display javamage
  LYS   lysine rotamers download arrow download arrow display javamage
  MET   methionine rotamers download arrow download arrow display javamage
  PHE   phenylanine rotamers download arrow download arrow display javamage
  PRO   proline rotamers download arrow download arrow display javamage
  SER   serine rotamers download arrow download arrow display javamage
  THR   threonine rotamers download arrow download arrow display javamage
  TRP   tryptophan rotamers download arrow download arrow display javamage
  TYR   tyrosine rotamers download arrow download arrow display javamage
  VAL   valine rotamers download arrow download arrow display javamage


These compressed files contain either all 19 rotamer PDBs or kinemages listed in the table above.