@text
Kinemage Supplement to Branden & Tooze "Introduction to Protein Structure", Second Edition
Chapter 15 -  RECOGNITION OF FOREIGN MOLECULES BY THE IMMUNE SYSTEM

		Contents of file c15Immun.kin:
*{Kin 1}* Immunoglobulin domains - CL, VL, light chain & FAB (Fig. 15.7-15.11)
*{Kin 2}* Intact IgG molecules, Y-shaped vs T-shaped (Fig. 15.17)
*{Kin 3}* Lysozyme/antibody complex - overview & spec. binding (Fig. 15.15-16)
*{Kin 4}* HLA-A2, an MHC class II antigen, with bound peptide (Fig. 15.18-20)
*{Kin 5}* T-cell receptor, complexed with MHC class I (Fig. 15.22-23)
*{Kin 6}* Multiple fibronectin domains (Fig. 15.24)
*{Kin 7}* Two domains of CD4, with beta ribbons (Fig. 15.25)

    *{Kinemage 1}* is an animated tour of the domain organization for the Fab part of an immunoglobulin, and the internal organization of those domains.  The start-up frame is a constant domain (CL), colored as in Fig. 15.8a, with the rear beta sheet in skyblue and the front sheet in seagreen; the strands are all antiparallel and have a Greek key topology.  The highly-conserved disulfide bond that crosses the inside of the barrel is in yellow.  The connection in pink is homologous to the region that is enlarged to form CDR2 (Complementarity-Determining Region 2) in variable domains.  Animate to continue the tour, next with a view of the interface between the CL domain and the CH1 domain (gray), which is packed against the skyblue sheet.
    Next (animate) is a similar view of a variable domain (VL); the blue and green beta strands are in equivalent positions and have equivalent connections as in the constant domain.  The pink region of CDR2 is longer and has two additional short strands.  Along with the CDR1 and CDR3 loops and the 3 CDRs on VH, it makes up the hypervariable region that changes sequence and conformation in various antibody molecules to provide complementary binding for an extremely wide variety of antigens.  We then view VL from the edge of the beta sandwich, showing VH (gray) forming a beta-barrel with the seagreen sheet this time.
    Then both domains of the light chain are shown, which are joined by a somewhat flexible linker.  Then the heavy chain is added to see all 4 domains of this Fab fragment.  The two variable domains associate tightly, with their green sheets back-to-back and their CDRs close together, and the two constant domains associate tightly with their two blue sheets back-to-back.  In an intact IgG, the second half of the heavy chains from two Fabs associate to form a 4-domain FC region made up of CH2 and CH3 domains.  Next there is a view of VL and VH from the top end, which makes up the antigen-combining region.  Last, the CDRs of the variable domains of both chains are shown.

    [To see the limited range of different conformations for a CDR, refer to Kin. 1 of c17Engin.kin.]  

    *{Kinemage 2}* shows the structure of an intact IgG-type immunoglobulin, including the Fc (bottom), both Fab portions (top arms), and the hinge region that joins them.  Light chains are in cyan and skyblue, heavy chains are in purple and magenta, and the local 2-fold axes within each Fab or Fc part are in pinktint.  The overall structure is T-shaped but somewhat asymmetrical (as in Fig. 15.17).  Animate, to change between two crystal structures of closely-related IgGs, to see some of the great flexibility possible for the hinge conformation and the overall shape.  The second example is more classically Y-shaped (as in the diagrams of Fig. 15.2), with the Fab and Fc parts closer together and angled differently.
    Make sure that the animation state is showing the original IgG T and choose View2 for a closeup of the Fc portion.  The CH2 domains of Fc make no direct contacts with each other but have two copies of a branched carbohydrate between them (shown in white), attached to heavy-chain Asn 314 (greentint).  View3 is a closeup of the hinge region, which contains a lot of Pro and Gly to promote staying extended and flexible, and which has the two chains joined by 3 closely-spaced disulfides (green).  
    View4 shows one of the Fab regions, which look very much the same as the isolated Fab we saw in Kin.1.  Turn on "CDRs" to highlight the 3 hypervariable loops from each chain that contribute to the antigen-binding site.  Choose View5 for a closeup of that site from the antigen's point of view.  Then recapitulate animation of the overall conformational changes in views 1 or 7, or explore the somewhat different CH2 and hinge structures of the Y-shaped version in views 8 and 9.

    *{Kinemage 3}* shows a complex of the enzyme lysozyme with an anti-lysozyme antibody (the Fab portion of Hy/Hel-10).  Lysozyme is in greentint, and the Fab in white and yellowtint, with yellow SS bridges.  This is a different anti-lysozyme antibody than the one illustrated in Fig. 15.15 and 15.16, and it binds to a completely separate region on lysozyme (Gln 121 from the other interface is shown in blue for comparison, off to the side), but the general nature of the binding is quite similar.  As can be seen in View2, the interface is quite extensive and fairly flat, and lysozyme sits over almost all of the surface made by the tops of the two variable domains.  In addition to direct protein-protein contacts, there is a good deal of buried water in the interface.  This particular complex buries and complements a pair of charged residues, in addition to the usual aromatic, hydrophobic, and H-bond interactions.  Choose View3 and turn on "binding sc" to see the set of heavy-chain side chains that bind Lys 97 of lysozyme.  The lysine is sandwiched between two aromatic rings and makes a charged H-bond to Asp 32, which in turn is H-bonded to an Asn.

    *{Kinemage 4}* shows the Calpha backbone of the HLA-A2 molecule, a class II major histocompatibility complex (MHC) antigen involved in T-cell activation.  It consists of 2 chains, one alpha1-alpha2 (greens) and one beta1-beta2 (yellows).  Alpha2 and beta2 are related to immunoglobulin constant domains, and are paired at bottom of the molecule (in View1, like Fig. 15.18a), near the cell surface.  A1 and b1 are the similar halves of the antigen-presenting top portion, which consists of a "floor" of an 8-stranded antiparallel beta sheet with two long alpha-helices on top separated by a crevice in which the antigen peptide binds (shown in blues).  Each of a1 and a2 has a simple topology of 4 up&down beta strands (called a "W") followed by a long helix across the top of the sheet.  MHC proteins are highly polymorphic, with the different classes binding different sets of peptides that have been cleaved from foreign antigenic proteins.  Choose View2 and turn on "side ch" to see more detail of the peptide binding, as in Fig. 15.20d.  The peptide backbone is extended, in a polyproline II type conformation.

    *{Kinemage 5}* shows the complex of T-cell receptor and an MHC class I antigen with bound peptide.  The MHC class I molecule has a different domain organization than class II, with both halves of the antigen-presenting portion in one 3-domain chain and a separate chain with the single b2m immunoglobulin-like domain.  The peptide (in gold), as typical for class I, is shorter and with a less regular conformation than those that bind to class II MHC.  The two termini of the peptide are bound within the MHC cleft, while the middle portion bulges up toward the T-cell receptor.  View1 shows the T-cell receptor portion of this complex, which has both of the variable domains (pinks) but only one of the two constant domains (blue).  View2 shows the entire complex, from a view like Fig. 15.23.

    *{Kinemage 6}* shows repeats 7 through 10 of the cell-surface protein fibronectin, each with a fibronectin III domain structure quite similar to an immunoglobulin domain.  The bottom domain has a loop with the RGD sequence that is implicated in binding to other cells.  The domains differ slightly in sequence and in structure details, and the spatial relationship between successive domains is different for each of these pairs.  View2 is a close-up of the RGD domain, colored as in Fig. 15.24, with the rear 3-strand beta sheet in orange and the front 4-strand sheet in green.

    *{Kinemage 7}* is a ribbon schematic of the first two domains of the T-cell surface co-receptor CD4, colored and oriented to match Fig. 15.25.  Each domain is immunoglobulin-like, as seen in View2 and View3, but in the second (green) domain the disulfide is a "staple" between two adjacent beta strands rather than the usual bridge between the two sides of the beta sandwich.  In View1 it can be seen that the connection between the two domains is a single, continuous beta strand (it has H-bonds in both directions from a single peptide in the middle), which can help rigidify the shape of the overall structure.


    Kinemages 2 and 7 were made by Claudia J. Richardson.

    Copyright 1999 Jane S. and David C. Richardson.  Permission freely granted for educational, research, and personal use.  For program updates and more information, see http://kinemage.biochem.duke.edu.
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@caption (B&T Fig. 15.8, 15.9)
Immunoglobulin domains - CL constant domain (View1) and VL variable domain (View2), with rear beta sheet in skyblue, front beta sheet in seagreen, disulfide in yellow, and CDR loops or homologous region in pink.  Animate for a tour of the parts of the Fab fragment.  (from PDB file 2FB4)
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{ca gly l 67}P 53.740 54.692 54.922
{ca ala l 68}50.600 56.075 53.414
{ca gly l 76}P 65.365 72.931 39.915
{ca leu l 77}62.035 74.218 38.690
{ca gln l 78}62.110 75.162 34.983
{ca ser l 79}59.472 76.950 32.806
{ca glu l 80}58.496 73.632 31.170
{ca asp l 81}57.361 72.351 34.534
{ca glu l 82}54.243 74.446 34.566
{ca thr l 106}P 53.277 77.806 38.611
{ca val l 107}56.751 79.112 37.800
{ca leu l 108}56.772 82.265 39.797
{ca gly l 109}57.552 85.677 38.525
@vectorlist {sheet 1} color= sky master= {sheet 1}
{arrow}P 46.999 64.627 48.413
{ca gln l 6}47.173 66.484 46.748
{arrow}44.825 65.631 46.836
{"}P 48.739 59.490 51.446
{ca gly l 24}46.574 58.321 51.001
{arrow}46.322 60.774 50.591
{"}P 54.859 56.791 54.154
{ca gly l 67}53.740 54.692 54.922
{arrow}55.833 54.137 53.673
{"}P 64.668 71.889 42.078
{ca gly l 76}65.365 72.931 39.915
{arrow}65.440 70.439 39.727
{ca leu l 4}P 44.265 60.491 46.942
{ca thr l 5}44.828 63.965 48.378
{ca gln l 6}47.173 66.484 46.748
{ca gln l 16}P 64.161 76.303 43.245
{ca arg l 17}63.286 72.907 44.609
{ca val l 18}59.545 72.311 44.526
{ca thr l 19}57.942 69.203 45.960
{ca ile l 20}54.380 67.887 45.744
{ca ser l 21}52.762 65.671 48.366
{ca cys l 22}50.102 62.935 47.960
{ca ser l 23}48.337 61.660 51.033
{ca gly l 24}46.574 58.321 51.001
{ca arg l 60}P 65.472 66.447 38.215
{ca phe l 61}62.320 64.465 38.908
{ca ser l 62}62.467 62.135 41.857
{ca gly l 63}59.907 60.139 43.777
{ca ser l 64}59.586 59.028 47.335
{ca lys l 65}57.154 56.947 49.397
{ca ser l 66}56.687 56.109 53.072
{ca gly l 67}53.740 54.692 54.922
{ca ala l 68}P 50.600 56.075 53.414
{ca ser l 69}52.268 59.119 51.929
{ca ala l 70}54.271 59.847 48.805
{ca ser l 71}55.920 62.802 47.219
{ca leu l 72}57.232 64.110 43.904
{ca ala l 73}60.395 66.320 43.912
{ca ile l 74}61.267 68.773 41.133
{ca gly l 75}64.798 69.707 41.717
{ca gly l 76}65.365 72.931 39.915
@vectorlist {sheet 2} color= sea master= {sheet 2}
{arw}P 49.452, 67.281, 30.221
{ca leu l 38} 48.318, 69.505, 30.359
{arw} 48.394, 68.443, 32.621
{arw}P 45.864, 49.836, 45.318
{ca asp l 91} 43.578, 50.231, 46.249
{arw} 43.724, 51.142, 43.925
{arrow}P 53.827 75.085 42.557
{ca ser l 11}54.830 77.265 43.260
{arrow}53.472 76.307 45.127
{arw}P 52.737 76.198 40.448
{ca thr l 106}53.277 77.806 38.611
{arrow}52.983 75.506 37.676
{ca ser l 9}P 48.917 74.177 43.910
{ca ala l 10}52.649 74.367 44.336
{ca ser l 11}54.830 77.265 43.260
{ca val l 32}P 52.723 55.049 43.494
{ca asn l 33}52.969 56.525 39.990
{ca trp l 34}53.170 60.216 39.059
{ca tyr l 35}51.761 61.740 35.870
{ca gln l 36}52.348 65.079 34.278
{ca gln l 37}49.433 66.479 32.315
{ca leu l 38}48.318 69.505 30.359
{ca pro l 39}44.528 69.703 30.977
{ca glu l 82}P 54.243 74.446 34.566
{ca thr l 83}51.614 71.736 34.353
{ca asp l 84}49.248 69.531 36.327
{ca tyr l 85}50.642 66.604 38.305
{ca tyr l 86}48.730 63.522 39.506
{ca cys l 87}49.816 60.717 41.799
{ca ala l 88}48.126 57.312 41.462
{ca ala l 89}47.838 53.896 43.136
{ca trp l 90}45.811 50.705 43.260
{ca asp l 91}43.578 50.231 46.249
{ca ala l 96}P 40.213 50.208 42.086
{ca tyr l 97}42.882 52.365 40.550
{ca val l 98}42.836 55.687 42.378
{ca phe l 99}44.004 59.101 41.119
{ca gly l 100}45.141 61.984 43.241
{ca thr l 101}43.064 65.213 43.165
{ca gly l 102}46.005 66.821 41.425
{ca thr l 103}48.382 69.784 41.690
{ca lys l 104}49.003 72.766 39.490
{ca val l 105}52.511 74.221 39.438
{ca thr l 106}53.277 77.806 38.611
@vectorlist {CDR} color= pink master= {CDR's}
{arrow}P 57.920 53.057 39.204
{ca arg l 49}56.722 52.175 41.213
{arrow}55.298 53.861 40.039
{"}P 60.113 56.994 34.535
{ca pro l 54}61.070 56.090 32.410
{arrow}62.832 56.152 34.183
{ca gly l 24}P 46.574 58.321 51.001
{ca thr l 25}45.456 55.464 53.274
{ca ser l 26}46.619 52.026 54.343
{ca ser l 27}44.668 50.387 51.572
{ca asn l 27a}46.246 52.226 48.627
{ca ile l 27b}49.615 54.004 49.172
{ca gly l 28}50.148 51.989 52.327
{ca ser l 29}49.700 48.784 50.339
{ca ser l 30}50.763 49.429 46.763
{ca thr l 31}53.309 51.447 44.673
{ca val l 32}52.723 55.049 43.494
{ca met l 41}P 45.415 66.316 26.876
{ca ala l 42}47.027 62.898 27.343
{ca pro l 43}49.024 62.529 30.542
{ca lys l 44}52.536 61.174 30.515
{ca leu l 45}54.109 58.794 33.091
{ca leu l 46}56.874 60.612 35.012
{ca ile l 47}57.516 58.212 37.890
{ca tyr l 48}56.514 54.539 38.283
{ca arg l 49}56.722 52.175 41.213
{ca asp l 50}57.395 54.942 43.805
{ca ala l 51}60.766 56.057 42.565
{ca met l 52}61.536 54.793 39.097
{ca arg l 53}61.818 56.987 36.031
{ca pro l 54}61.070 56.090 32.410
{ca asp l 91}P 43.578 50.231 46.249
{ca val l 92}43.607 46.525 47.329
{ca ser l 93}40.332 46.769 49.429
{ca leu l 94}38.248 48.598 46.767
{ca asn l 95}39.840 46.879 43.833
{ca ala l 96}40.213 50.208 42.086
@balllist {S} color= gold radius= 0.25 master= {SS}
{sg cys l 22}49.578 60.677 46.251
{sg cys l 87}48.929 61.216 44.430
@vectorlist {ss} color= yellow master= {SS}
{ca cys l 22}P 50.102 62.935 47.960
{cb cys l 22}50.634 62.048 46.799
{sg cys l 22}49.578 60.677 46.251
{sg cys l 87}48.929 61.216 44.430
{cb cys l 87}50.236 60.750 43.279
{ca cys l 87}49.816 60.717 41.799
@labellist {CDR lbl} color= hotpink master= {labels}
{ CDR L1}49.700 48.784 50.339
{ CDR L3}40.332 46.769 49.429
{CDR L2}54.762 52.601 41.812
@labellist {N lbl} color= blue master= {labels}
{ N}37.580 54.759 49.388

@group {VL-CL} dominant animate moview= 4
@subgroup {VL } instance= {VL}
@subgroup {VH} dominant
@vectorlist {ca-ca} color= gray
{ca glu h 1}P 56.019 52.320 19.417
{ca val h 2}52.829 51.682 21.334
{ca gln h 3}49.937 53.678 19.865
{ca leu h 4}46.423 53.884 21.416
{ca val h 5}43.663 55.651 19.383
{ca gln h 6}40.229 56.300 20.973
{ca ser h 7}37.071 56.651 18.917
{ca gly h 8}33.299 56.871 19.290
{ca gly h 9}32.792 59.983 21.378
{ca gly h 10}29.790 62.217 20.931
{ca val h 11}27.046 64.490 22.226
{ca val h 12}23.982 62.769 23.689
{ca gln h 13}21.061 63.460 25.959
{ca pro h 14}20.542 61.831 29.403
{ca gly h 15}19.610 58.182 29.434
{ca arg h 16}21.092 57.466 25.998
{ca ser h 17}24.060 55.271 24.976
{ca leu h 18}27.489 55.368 23.403
{ca arg h 19}30.240 52.915 22.606
{ca leu h 20}33.894 53.843 22.693
{ca ser h 21}36.662 51.922 21.017
{ca cys h 22}40.425 51.969 21.474
{ca ser h 23}42.472 50.509 18.715
{ca ser h 24}46.069 49.583 19.390
{ca ser h 25}49.396 48.791 17.660
{ca gly h 26}53.126 48.422 18.528
{ca phe h 27}52.679 45.712 21.225
{ca ile h 28}51.274 42.245 21.969
{ca phe h 29}47.887 43.485 22.996
{ca ser h 30}46.699 40.279 24.657
{ca ser h 31}49.491 40.487 27.261
{ca tyr h 32}48.475 43.592 29.080
{ca ala h 33}45.609 44.871 31.201
{ca met h 34}43.856 47.903 29.661
{ca tyr h 35}42.253 50.955 31.311
{ca trp h 36}39.591 53.567 30.687
{ca val h 37}40.149 56.926 32.458
{ca arg h 38}38.121 60.087 32.052
{ca gln h 39}38.486 63.811 32.652
{ca ala h 40}35.549 66.164 33.234
{ca pro h 41}36.158 69.693 32.052
{ca gly h 42}38.040 71.602 34.693
{ca lys h 43}38.445 68.543 36.869
{ca gly h 44}41.063 65.859 37.531
{ca leu h 45}41.710 62.336 36.191
{ca glu h 46}39.083 59.765 37.241
{ca trp h 47}39.661 56.013 36.639
{ca val h 48}36.679 54.250 35.015
{ca ala h 49}37.595 50.605 34.493
{ca ile h 50}40.257 47.938 34.044
{ca ile h 51}40.139 44.631 32.195
{ca trp h 52}42.637 41.764 32.532
{ca asp h 53}44.835 40.582 29.672
{ca asp h 54}42.526 37.625 28.876
{ca gly h 55}39.352 39.508 29.863
{ca ser h 56}38.690 37.021 32.642
{ca asp h 57}37.838 39.785 35.038
{ca gln h 58}36.969 43.465 34.954
{ca his h 59}36.670 46.144 37.675
{ca tyr h 60}34.738 49.419 37.679
{ca ala h 61}34.542 52.777 39.469
{ca asp h 62}31.523 52.877 41.826
{ca ser h 63}29.909 55.742 39.821
{ca val h 64}29.746 53.643 36.695
{ca lys h 65}29.146 50.113 37.813
{ca gly h 66}26.258 48.550 35.983
{ca arg h 67}25.926 51.279 33.347
{ca phe h 68}29.343 50.742 31.723
{ca thr h 69}30.845 47.535 30.300
{ca ile h 70}34.528 47.105 29.476
{ca ser h 71}35.409 44.358 27.064
{ca arg h 72}38.150 43.548 24.595
{ca asn h 73}38.884 41.714 21.409
{ca asp h 74}42.440 40.340 21.515
{ca ser h 75}41.881 39.122 18.025
{ca lys h 76}41.444 42.617 16.725
{ca asn h 77}43.668 44.344 19.348
{ca thr h 78}40.685 46.598 20.396
{ca leu h 79}39.261 47.738 23.688
{ca phe h 80}35.582 48.744 24.067
{ca leu h 81}33.557 50.814 26.498
{ca gln h 82}29.753 50.335 26.286
{ca met h 83}28.206 53.265 28.057
{ca asp h 84}24.536 52.876 28.908
{ca ser h 85}22.036 55.220 30.625
{ca leu h 86}24.462 58.089 30.416
{ca arg h 87}24.288 60.954 32.925
{ca pro h 88}25.416 64.593 32.599
{ca glu h 89}28.112 63.852 35.157
{ca asp h 90}29.637 61.456 32.686
{ca thr h 91}30.711 64.330 30.478
{ca gly h 92}34.470 64.233 29.926
{ca val h 93}37.405 63.267 27.748
{ca tyr h 94}37.859 59.482 27.723
{ca phe h 95}41.328 57.967 27.545
{ca cys h 96}42.348 54.401 27.154
{ca ala h 97}45.663 53.336 28.625
{ca arg h 98}47.863 50.264 28.784
{ca asp h 99}48.771 48.695 32.133
{ca gly h 100}52.535 48.363 32.093
{ca gly h 101}52.741 45.159 34.136
{ca his h 101a}51.857 41.510 33.918
{ca gly h 101b}48.263 41.482 32.772
{ca phe h 101c}46.471 42.413 36.028
{ca cys h 101d}46.541 44.362 39.285
{ca ser h 102}46.349 42.814 42.743
{ca ser h 103}47.516 42.965 46.364
{ca ala h 104}50.798 41.646 44.994
{ca ser h 104a}51.424 44.180 42.274
{ca cys h 104b}49.988 46.964 40.061
{ca phe h 104c}52.173 48.754 37.579
{ca gly h 104d}49.554 51.259 36.480
{ca pro h 105}48.936 53.132 33.198
{ca asp h 106}52.054 53.458 31.128
{ca tyr h 107}51.073 54.558 27.702
{ca trp h 108}47.928 56.625 27.071
{ca gly h 109}45.774 57.446 24.050
{ca gln h 110}44.743 60.926 22.909
{ca gly h 111}41.198 61.044 24.311
{ca thr h 112}37.712 61.029 22.852
{ca pro h 113}35.231 63.650 24.220
{ca val h 114}31.828 62.722 25.609
{ca thr h 115}29.145 65.343 26.230
{ca val h 116}25.906 64.409 28.010
{ca ser h 117}23.496 67.320 28.356
{ca ser h 118}19.828 68.098 28.821
@vectorlist {ss} color= gold master= {SS}
{ca cys h 22}P 40.425 51.969 21.474
{cb cys h 22}40.847 51.978 22.951
{sg cys h 22}42.611 52.068 23.299
{sg cys h 96}42.880 53.671 24.547
{cb cys h 96}42.051 53.329 26.084
{ca cys h 96}42.348 54.401 27.154
{ca cys h 101d}P 46.541 44.362 39.285
{cb cys h 101d}45.967 45.786 39.249
{sg cys h 101d}46.915 46.919 38.202
{sg cys h 104b}47.582 48.410 39.462
{cb cys h 104b}48.727 47.641 40.639
{ca cys h 104b}49.988 46.964 40.061

@group {Light ch} dominant animate moview= 6
@subgroup {VL } instance= {VL}
@subgroup {CL } instance= {CL}

@group {Fab} dominant animate moview= 6
@subgroup {VL } instance= {VL}
@subgroup {CL } instance= {CL}
@subgroup {VH } instance= {VH}
@subgroup {CH1 } instance= {CH1}

@group {VL-VH top} dominant animate moview= 5
@subgroup {VL } instance= {VL}
@subgroup {VH } instance= {VH}

@group {ant-comb} dominant animate moview= 5
@subgroup {VL } instance= {VL}
@subgroup {VH } instance= {VH}
@subgroup {CDR's} dominant
@labellist {lbl} color= pink master= {labels}
{ CDR H1}   49.491, 40.487, 27.261
{   CDR H2}   37.838, 39.785, 35.038
{     CDR H3}   46.541, 44.362, 39.285
@vectorlist {ca-ca} color= pinktint master= {CDR's}
{ca ser h 25}P 49.396 48.791 17.660
{ca gly h 26}53.126 48.422 18.528
{ca phe h 27}52.679 45.712 21.225
{ca ile h 28}51.274 42.245 21.969
{ca phe h 29}47.887 43.485 22.996
{ca ser h 30}46.699 40.279 24.657
{ca ser h 31}49.491 40.487 27.261
{ca tyr h 32}48.475 43.592 29.080
{ca ala h 33}45.609 44.871 31.201
{ca trp h 52}P 42.637 41.764 32.532
{ca asp h 53}44.835 40.582 29.672
{ca asp h 54}42.526 37.625 28.876
{ca gly h 55}39.352 39.508 29.863
{ca ser h 56}38.690 37.021 32.642
{ca asp h 57}37.838 39.785 35.038
{ca gln h 58}36.969 43.465 34.954
{ca his h 59}36.670 46.144 37.675
{ca arg h 98}P 47.863 50.264 28.784
{ca asp h 99}48.771 48.695 32.133
{ca gly h 100}52.535 48.363 32.093
{ca gly h 101}52.741 45.159 34.136
{ca his h 101a}51.857 41.510 33.918
{ca gly h 101b}48.263 41.482 32.772
{ca phe h 101c}46.471 42.413 36.028
{ca cys h 101d}46.541 44.362 39.285
{ca ser h 102}46.349 42.814 42.743
{ca ser h 103}47.516 42.965 46.364
{ca ala h 104}50.798 41.646 44.994
{ca ser h 104a}51.424 44.180 42.274
{ca cys h 104b}49.988 46.964 40.061
{ca phe h 104c}52.173 48.754 37.579
{ca gly h 104d}49.554 51.259 36.480
{ca pro h 105}48.936 53.132 33.198
{ca asp h 106}52.054 53.458 31.128

@kinemage 2
@caption (B&T Fig. 15.17, 15.2)
The Calpha backbone for an intact IgG-type immunoglobulin molecule.  The light chains are in cyan and skyblue, the heavy chains in purple and magenta, and the bound carbohydrate in Fc in white.  Animate to switch between the structures of two related IgGs, to see the relative motion of the parts.
(from PDB files 1IGY, 1IGT)
@onewidth
@viewid {overview}
@zoom 1.05 
@zslab 200
@center -2.679 -23.21 1.434
@matrix
-0.19224 -.54751 .81442 .9274 .17002 .33321 -.3209 .81934 .47507
@2viewid {Fc  T}
@2zoom 2.22
@2zslab 160
@2center 16.182 -12.896 -24.888
@2matrix
-0.544263 -.805696 -.233732 -.579599 .15971 .799097 -.6065 .57039 -.553906
@3viewid {hinge SSs  T}
@3zoom 3.83
@3zslab 150
@3center 6.098 -11.396 14.511
@3matrix
-0.223359 -.389714 .89344 .965881 .034778 .256639 -.131087 .92028 .368649
@4viewid {Fab}
@4zoom 2.47
@4zslab 200
@4center 3.149 -55.332 45.374
@4matrix
-0.656322 .461103 .59718 -.217658 -.873576 .435303 .722403 .155717 .67371
@5viewid {antigen site}
@5zoom 2.96 
@5zslab 80
@5center 8.235 -78.989 55.647
@5matrix
0.45348 -.85115 .26437 .50432 .00048 -.86352 .73486 .52492 .42947
@7viewid {overview 2}
@7zoom 1.05
@7zslab 200
@7center -2.411 -16.932 8.823
@7matrix
-0.147857 -.836351 .527878 .988593 -.109506 .103404 -.028676 .537146 .843
@8viewid {Fc  Y}
@8zoom 2.22
@8zslab 120
@8center 27.690 -14.247 -20.346
@8matrix
-0.08367 .304603 .948797 .830985 .546812 -.10227 -.549966 .779881 -.29887
@9viewid {hinge SSs  Y}
@9zoom 3.83
@9zslab 140
@9center 25.082 -14.619 6.81
@9matrix
0.08479 -.619445 .780448 .99377 .109438 -.021107 -.072335 .777374 .624864
@master {SS}
@master {axes}
@master {CDRs}
@group {IgG  T} animate
@subgroup {light ch 1} dominant
@vectorlist {Calphas} color= cyan
{ ca  asp a 1 }P 1.649 -84.304 45.569
{ ca  ile a 2 }-0.861 -83.420 48.270
{ ca  val a 3 }-2.524 -80.212 47.174
{ ca  leu a 4 }-3.913 -78.072 49.981
{ ca  thr a 5 }-7.110 -75.985 49.474
{ ca  gln a 6 }-7.379 -72.842 51.537
{ ca  ser a 7 }-10.771 -71.152 51.476
{ ca  pro a 8 }-12.014 -68.592 50.934
{ ca  ser a 9 }-9.551 -66.586 48.873
{ ca  ser a 10 }-10.179 -63.201 50.522
{ ca  leu a 11 }-12.273 -61.884 53.386
{ ca  ser a 12 }-13.426 -58.624 54.907
{ ca  ala a 13 }-14.773 -58.129 58.413
{ ca  ser a 14 }-15.005 -55.478 61.108
{ ca  leu a 15 }-12.507 -55.005 63.925
{ ca  gly a 16 }-13.047 -57.288 66.902
{ ca  asp a 17 }-14.821 -59.840 64.743
{ ca  thr a 18 }-13.921 -63.492 65.023
{ ca  ile a 19 }-13.192 -65.039 61.610
{ ca  thr a 20 }-12.414 -68.555 60.368
{ ca  ile a 21 }-10.068 -69.462 57.531
{ ca  thr a 22 }-9.855 -73.098 56.465
{ ca  cys a 23 }-7.613 -75.563 54.636
{ ca  his a 24 }-8.274 -78.981 53.190
{ ca  ala a 25 }-6.024 -81.655 51.933
{ ca  ser a 26 }-6.230 -84.300 49.274
{ ca  gln a 27 }-4.451 -87.020 51.273
{ ca  asn a 28 }-4.451 -87.331 55.094
{ ca  ile a 29 }-1.718 -85.208 56.766
{ ca  asn a 30 }-2.500 -86.160 60.343
{ ca  val a 31 }-1.722 -82.968 62.169
{ ca  trp a 32 }1.213 -81.650 60.179
{ ca  leu a 33 }-0.135 -78.217 59.268
{ ca  ser a 34 }1.445 -74.833 59.704
{ ca  trp a 35 }-0.072 -71.362 59.368
{ ca  tyr a 36 }1.855 -68.332 58.178
{ ca  gln a 37 }1.079 -64.632 58.173
{ ca  gln a 38 }2.409 -62.261 55.490
{ ca  lys a 39 }1.515 -58.601 56.044
{ ca  pro a 40 }1.833 -56.677 52.720
{ ca  gly a 41 }5.520 -56.148 52.146
{ ca  asn a 42 }7.106 -57.842 55.184
{ ca  ile a 43 }8.168 -61.533 55.184
{ ca  pro a 44 }5.997 -64.415 56.392
{ ca  lys a 45 }6.237 -65.274 60.045
{ ca  leu a 46 }5.271 -68.632 61.488
{ ca  leu a 47 }1.964 -68.470 63.372
{ ca  ile a 48 }1.050 -72.075 64.171
{ ca  tyr a 49 }2.580 -75.491 63.772
{ ca  lys a 50 }1.289 -78.969 64.554
{ ca  ala a 51 }-2.254 -77.805 63.774
{ ca  ser a 52 }-2.909 -76.063 67.082
{ ca  asn a 53 }0.527 -75.316 68.441
{ ca  leu a 54 }0.881 -71.566 68.651
{ ca  his a 55 }4.327 -70.167 67.887
{ ca  thr a 56 }6.147 -67.669 70.097
{ ca  gly a 57 }4.628 -64.189 70.074
{ ca  val a 58 }1.251 -65.172 68.620
{ ca  pro a 59 }-1.230 -63.422 70.950
{ ca  ser a 60 }-3.838 -65.857 72.307
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@subgroup {} dominant nobutton
@vectorlist {Drawn} color= pinktint master= {axes}
{Y Fab1 2fold}P 10.141 -6.020 10.287
{"} pinktint -13.734 17.183 13.825
{"} pinktint -37.610 40.385 17.363
{Y Fab2 2fold}P 4.064 -66.912 69.215
{"} pinktint 6.293 -43.835 45.160
{"} pinktint 8.522 -20.757 21.104
{Y Fc 2fold}P  pinktint 9.797 -17.620 -46.584
{"} pinktint 24.728 -14.494 -19.940
{"} pinktint 39.659 -11.368 6.704
@vectorlist {Drawn} color= yellow master= {SS}
{ sg  cys a 214 }P 8.845 -8.058 8.987
{ sg  cys b 235 }9.427 -9.411 10.391
{ sg  cys d 237 }P 14.853 -11.920 11.948
{ sg  cys b 237 }14.468 -13.862 11.472
{ sg  cys c 214 }P 11.096 -17.135 20.257
{ sg  cys d 235 }12.341 -15.778 19.362
{ sg  cys d 240 }P 25.401 -12.657 9.097
{ sg  cys b 240 }25.300 -14.558 9.845
{ sg  cys b 242 }P 28.367 -14.081 7.757
{ sg  cys d 242 }28.190 -12.098 8.166


@kinemage 3
@caption (B&T Fig. 15.15, 15.16)
Complex of lysozyme with an anti-lysozyme antibody (Fab portion of Hy/Hel-10).  Lysozyme is in greentint, Fab in white and yellowtint, with SS bridges.  Choose View3 and turn on "binding sc" to see side chains that bind Lys 97 of lysozyme.  (from PDB file 3HFM)
@onewidth 
@viewid {overview}
@zoom 0.94
@zslab 130
@center 21.285 34.368 46.308
@matrix
.861171 -.357865 -.360996 -.508301 -.611749 -.60613 -.003926 .705476 -.708723
@2viewid {interface}
@2zoom 1.45
@2zslab 170
@2center 19.016 22.138 62.562
@2matrix
.89157 -.322639 -.317819 -.450791 -.564825 -.691202 .043497 .759524 -.649023
@3viewid {sc closeup}
@3zoom 3.3
@3zslab 190
@3center 22.985 19.865 63.074
@3matrix
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@group {FAB} 
@subgroup dominant {light ch} 
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{ca asp l 1}P 9.822 19.54 43.611
{ca ile l 2}8.185 22.322 45.717
{ca val l 3}8.059 26.04 44.9
{ca leu l 4}8.071 29.244 46.882
{ca thr l 5}6.917 32.484 45.22
{ca gln l 6}8.659 35.602 46.481
{ca ser l 7}6.718 38.811 46.071
{ca pro l 8}7.52 41.604 45.518
{ca ala l 9}10.411 41.496 43.034
{ca thr l 10}12.176 44.677 44.185
{ca leu l 11}11.693 47.245 46.917
{ca ser l 12}13.219 50.704 47.017
{ca val l 13}12.773 52.03 50.588
{ca thr l 14}13.392 55.144 52.56
{ca pro l 15}15.562 54.846 55.634
{ca gly l 16}13.248 54.462 58.601
{ca asn l 17}10.222 53.024 56.809
{ca ser l 18}8.829 49.535 57.413
{ca val l 19}8.677 46.944 54.651
{ca ser l 20}7.528 43.312 54.383
{ca leu l 21}8.475 40.482 52.042
{ca ser l 22}6.222 37.496 51.295
{ca cys l 23}7.043 33.906 50.284
{ca arg l 24}4.356 31.47 49.125
{ca ala l 25}5.149 27.8 49.157
{ca ser l 26}2.923 25.609 46.962
{ca gln l 27}2.545 23.183 49.845
{ca ser l 28}1.605 23.03 53.482
{ca ile l 29}5.286 22.885 54.505
{ca gly l 30}4.2 24.126 57.931
{ca asn l 31}6.713 26.227 59.838
{ca asn l 32}9.97 25.292 58.073
{ca leu l 33}10.526 28.401 55.947
{ca his l 34}13.814 30.143 56.743
{ca trp l 35}15.128 33.424 55.52
{ca tyr l 36}18.623 34.391 54.493
{ca gln l 37}20.176 37.67 53.35
{ca gln l 38}22.814 37.964 50.619
{ca lys l 39}24.464 41.386 50.682
{ca ser l 40}26.389 42.398 47.548
{ca his l 41}29.627 40.468 47.243
{ca glu l 42}29.081 37.658 49.703
{ca ser l 43}27.711 34.365 50.774
{ca pro l 44}24.306 34.486 52.431
{ca arg l 45}23.66 34.445 56.173
{ca leu l 46}20.691 33.058 58.113
{ca leu l 47}18.36 35.703 59.529
{ca ile l 48}15.405 33.757 60.903
{ca lys l 49}15.02 29.978 61.409
{ca tyr l 50}11.871 27.821 61.25
{ca ala l 51}9.487 30.802 60.774
{ca ser l 52}9.689 33.307 63.599
{ca gln l 53}12.748 31.923 65.423
{ca ser l 54}15.255 34.791 65.182
{ca ile l 55}18.935 33.777 64.888
{ca ser l 56}21.248 35.433 67.465
{ca gly l 57}23.205 38.522 66.554
{ca ile l 58}20.586 39.781 64.104
{ca pro l 59}18.642 43.035 64.428
{ca ser l 60}15.398 43.277 66.366
{ca arg l 61}14.07 44.96 63.247
{ca phe l 62}13.749 41.527 61.684
{ca ser l 63}10.509 39.712 62.411
{ca gly l 64}9.029 36.632 60.783
{ca ser l 65}5.705 34.901 61.155
{ca gly l 66}3.453 32.416 59.449
{ca ser l 67}3.081 28.712 59.007
{ca gly l 68}0.963 26.934 56.415
{ca thr l 69}1.517 28.44 52.955
{ca asp l 70}1.579 32.166 53.533
{ca phe l 71}4.876 33.224 55.066
{ca thr l 72}6.274 36.726 55.678
{ca leu l 73}9.371 38.483 57.044
{ca ser l 74}9.163 42.13 58.114
{ca ile l 75}11.968 44.676 58.291
{ca asn l 76}10.905 47.376 60.75
{ca ser l 77}12.543 50.797 60.577
{ca val l 78}14.877 49.867 57.69
{ca glu l 79}18.519 50.815 57.649
{ca thr l 80}20.944 51.561 54.847
{ca glu l 81}22.811 48.471 55.928
{ca asp l 82}19.71 46.521 54.863
{ca phe l 83}20.316 46.752 51.136
{ca gly l 84}20.843 43.218 49.85
{ca met l 85}18.66 40.361 48.723
{ca tyr l 86}16.37 38.098 50.667
{ca phe l 87}15.499 34.53 49.692
{ca cys l 88}13.399 31.934 51.537
{ca gln l 89}14.112 28.172 51.753
{ca gln l 90}11.83 25.359 52.91
{ca ser l 91}13.505 22.301 54.468
{ca asn l 92}10.217 20.515 54.896
{ca ser l 93}10.667 18.356 51.828
{ca trp l 94}13.485 17.129 49.637
{ca pro l 95}14.758 18.826 47.678
{ca tyr l 96}15.169 21.938 49.798
{ca thr l 97}14.087 24.749 47.398
{ca phe l 98}14.961 28.465 47.425
{ca gly l 99}12.939 31.524 46.464
{ca gly l 100}13.038 34.026 43.647
{ca gly l 101}14.724 36.587 45.927
{ca thr l 102}13.837 40.222 46.66
{ca lys l 103}16.263 43.119 46.174
{ca leu l 104}15.544 45.765 48.8
{ca glu l 105}16.955 49.126 47.736
{ca ile l 106}17.623 52.127 49.956
{ca lys l 107}16.149 55.438 48.841
{ca arg l 108}19.035 57.876 48.779
{ca ala l 109}18.61 61.543 47.816
{ca asp l 110}18.794 62.604 44.116
{ca ala l 111}22.446 62.801 43.132
{ca ala l 112}24.081 63.437 39.771
{ca pro l 113}26.524 61.605 37.567
{ca thr l 114}30.184 62.576 37.271
{ca val l 115}30.974 61.857 33.636
{ca ser l 116}34.454 61.046 32.407
{ca ile l 117}35.982 60.187 29.032
{ca phe l 118}39.247 58.474 28.03
{ca pro l 119}40.388 58.031 24.41
{ca pro l 120}41.628 54.691 23.109
{ca ser l 121}44.884 54.087 25.017
{ca ser l 122}48.09 54.329 22.945
{ca glu l 123}49.193 50.758 23.14
{ca gln l 124}45.649 49.67 22.227
{ca leu l 125}45.8 51.459 18.887
{ca thr l 126}48.901 49.444 17.995
{ca ser l 127}46.834 46.262 18.059
{ca gly l 128}44.419 48.035 15.721
{ca gly l 129}42.067 48.397 18.664
{ca ala l 130}40.541 51.631 19.98
{ca ser l 131}38.361 51.836 23.067
{ca val l 132}36.711 55.114 24.028
{ca val l 133}35.497 54.758 27.621
{ca cys l 134}32.9 56.701 29.569
{ca phe l 135}32.74 56.716 33.348
{ca leu l 136}29.421 57.954 34.753
{ca asn l 137}30.104 57.387 38.444
{ca asn l 138}28.002 57.801 41.528
{ca phe l 139}24.377 58.466 40.731
{ca tyr l 140}20.915 57.622 41.961
{ca pro l 141}18.305 56.837 40.871
{ca lys l 142}19.297 53.754 38.948
{ca asp l 143}17.784 55.278 35.769
{ca ile l 144}19.8 57.17 33.185
{ca asn l 145}20.378 57.198 29.411
{ca val l 146}23.782 57.61 27.876
{ca lys l 147}24.347 58.36 24.2
{ca trp l 148}27.56 58.507 22.225
{ca lys l 149}28.327 60.862 19.366
{ca ile l 150}31.325 60.379 17.06
{ca asp l 151}31.759 63.801 15.522
{ca gly l 152}28.27 65.25 15.09
{ca ser l 153}25.777 62.489 15.814
{ca glu l 154}24.753 59.321 17.555
{ca arg l 155}26.072 55.766 17.467
{ca gln l 156}24.427 52.349 17.989
{ca asn l 157}25.41 48.757 18.753
{ca gly l 158}29.193 49.163 19.141
{ca val l 159}28.162 50.341 22.64
{ca leu l 160}29.011 48.508 25.83
{ca asn l 161}27.601 49.517 29.178
{ca ser l 162}28.003 47.908 32.61
{ca trp l 163}26.155 48.998 35.729
{ca thr l 164}26.881 48.193 39.346
{ca asp l 165}24.86 47.104 42.346
{ca gln l 166}23.935 49.886 44.784
{ca asp l 167}26.998 51.037 46.765
{ca ser l 168}27.924 49.907 50.287
{ca lys l 169}28.45 53.595 51.047
{ca asp l 170}25.668 56.06 50.197
{ca ser l 171}23.219 54.018 48.118
{ca thr l 172}24.929 55.655 45.146
{ca tyr l 173}25.271 53.922 41.776
{ca ser l 174}27.854 54.174 39.007
{ca met l 175}27.815 52.609 35.526
{ca ser l 176}30.35 52.349 32.688
{ca ser l 177}30.044 52.438 28.888
{ca thr l 178}32.656 51.374 26.379
{ca leu l 179}32.692 52.156 22.706
{ca thr l 180}34.8 49.826 20.613
{ca leu l 181}35.797 50.305 17.036
{ca thr l 182}38.746 49.474 14.832
{ca lys l 183}41.651 51.823 14.235
{ca asp l 184}40.618 52.908 10.713
{ca glu l 185}37.063 53.873 11.716
{ca tyr l 186}38.506 55.506 14.766
{ca glu l 187}40.278 58.395 13.002
{ca arg l 188}37.801 59.064 10.163
{ca his l 189}36.493 61.342 12.808
{ca asn l 190}37.936 63.449 15.581
{ca ser l 191}35.092 64.283 17.942
{ca tyr l 192}33.845 61.7 20.403
{ca thr l 193}31.129 62.633 22.877
{ca cys l 194}29.608 60.799 25.816
{ca glu l 195}26.47 62.682 26.759
{ca ala l 196}24.208 61.458 29.48
{ca thr l 197}20.879 62.713 30.716
{ca his l 198}19.725 62.004 34.247
{ca lys l 199}16.911 63.018 36.58
{ca thr l 200}19.402 65.268 38.375
{ca ser l 201}19.221 67.919 35.605
{ca thr l 202}17.241 69.19 32.623
{ca ser l 203}20.356 69.344 30.509
{ca pro l 204}22.957 66.769 29.616
{ca ile l 205}26.312 66.406 31.307
{ca val l 206}28.558 66.612 28.185
{ca lys l 207}32.042 65.117 28.389
{ca ser l 208}33.949 65.303 25.122
{ca phe l 209}37.356 65.5 23.553
{ca asn l 210}38.586 65.52 19.921
{ca arg l 211}41.519 63.342 18.761
{ca asn l 212}44.099 66.117 19.191
{ca glu l 213}46.549 63.221 19.524
{ca cys l 214}49.955 62.2 20.718
@vectorlist {SS} color= yellow master= {SS}
{ca cys l 23}P 7.043 33.906 50.284
{cb cys l 23}8.324 33.547 51.007
{sg cys l 23}9.014 31.905 50.74
{sg cys l 88}10.917 32.28 50.149
{cb cys l 88}11.918 32.161 51.632
{ca cys l 88}13.399 31.934 51.537
{ca cys l 134}P 32.9 56.701 29.569
{cb cys l 134}31.664 57.156 28.802
{sg cys l 134}31.149 58.788 29.438
{sg cys l 194}29.679 59.362 28.187
{cb cys l 194}30.571 60.066 26.76
{ca cys l 194}29.608 60.799 25.816
@subgroup dominant {heavy ch} 
@vectorlist {ca-ca} color= yellowtint master= {Calphas}
{ca asp h 1}P 35.745 30.294 65.089
{ca val h 2}34.445 27.829 62.487
{ca gln h 3}35.558 28.485 58.907
{ca leu h 4}34.852 26.655 55.665
{ca gln h 5}36.845 27.534 52.527
{ca glu h 6}35.869 25.916 49.224
{ca ser h 7}38.546 25.091 46.676
{ca gly h 8}39.012 23.638 43.216
{ca pro h 9}39.391 24.68 39.585
{ca ser h 10}38.132 27.66 37.66
{ca leu h 11}37.308 25.743 34.542
{ca val h 12}36.797 22.375 32.993
{ca lys h 13}35.624 21.234 29.608
{ca pro h 14}32.053 20.247 29.028
{ca ser h 15}31.301 16.612 29.705
{ca gln h 16}34.457 16.41 31.766
{ca thr h 17}34.138 16.249 35.579
{ca leu h 18}34.55 18.946 38.171
{ca ser h 19}35.848 18.27 41.621
{ca leu h 20}35.878 20.863 44.367
{ca thr h 21}36.605 20.67 48.08
{ca cys h 22}35.646 22.565 51.197
{ca ser h 23}38.369 22.343 53.792
{ca val h 24}36.653 22.824 57.145
{ca thr h 25}39.006 24.104 59.827
{ca gly h 26}38.593 25.245 63.427
{ca asp h 27}35.435 23.272 64.228
{ca ser h 28}35.176 19.502 64.026
{ca ile h 29}33.436 17.63 61.18
{ca thr h 30}32.967 14.302 62.857
{ca ser h 31}29.249 14.467 62.162
{ca asp h 32}27.816 17.974 61.721
{ca tyr h 33}25.669 17.628 58.581
{ca trp h 34}27.301 19.413 55.611
{ca ser h 35}26.113 20.517 52.172
{ca trp h 36}26.757 21.961 48.738
{ca ile h 37}24.77 24.869 47.246
{ca arg h 38}25.141 26.514 43.83
{ca lys h 39}24.214 30.074 42.861
{ca phe h 40}23.523 30.516 39.135
{ca pro h 41}23.973 33.663 37.011
{ca gly h 42}20.319 34.656 37.29
{ca asn h 43}21.159 35.038 40.994
{ca arg h 44}18.952 32.103 41.979
{ca leu h 45}20.316 29.622 44.445
{ca glu h 46}19.974 25.872 44.173
{ca tyr h 47}20.77 23.309 46.849
{ca met h 48}22.872 20.396 45.626
{ca gly h 49}22.537 17.662 48.344
{ca tyr h 50}24.237 16.964 51.71
{ca val h 51}26.183 14.632 54.017
{ca ser h 52}24.59 13.734 57.347
{ca tyr h 53}26.347 11.889 60.183
{ca ser h 54}26.736 8.26 59.116
{ca gly h 55}27.348 8.742 55.403
{ca ser h 56}23.691 9.17 54.598
{ca thr h 57}23.572 11.315 51.435
{ca tyr h 58}20.651 12.991 49.663
{ca tyr h 59}20.806 14.801 46.301
{ca asn h 60}18.666 17.21 44.332
{ca pro h 61}17.083 15.272 41.473
{ca ser h 62}17.468 18.423 39.336
{ca leu h 63}21.136 17.402 39.522
{ca lys h 64}20.829 14.026 37.682
{ca ser h 65}23.106 11.412 39.242
{ca arg h 66}26.127 13.387 38.145
{ca ile h 67}26.938 14.209 41.763
{ca ser h 68}28.702 12.283 44.51
{ca ile h 69}29.348 14.208 47.751
{ca thr h 70}31.897 12.536 50.057
{ca arg h 71}34.199 13.201 53.027
{ca asp h 72}37.632 12.708 54.576
{ca thr h 73}37.623 12.851 58.402
{ca ser h 74}41.35 12.424 59.003
{ca lys h 75}41.897 15.282 56.59
{ca asn h 76}38.88 17.031 58.15
{ca gln h 77}37.531 17.979 54.671
{ca tyr h 78}34.723 16.907 52.384
{ca tyr h 79}34.39 17.158 48.624
{ca leu h 80}31.997 17.55 45.738
{ca asp h 81}32.116 15.817 42.394
{ca leu h 82}29.91 16.814 39.489
{ca asn h 83}30.393 14.335 36.686
{ca ser h 84}29.348 14.958 33.103
{ca val h 85}29.675 18.727 33.476
{ca thr h 86}27.942 21.073 31.011
{ca thr h 87}27.267 24.726 30.2
{ca glu h 88}24.364 25.242 32.626
{ca asp h 89}26.618 23.913 35.361
{ca thr h 90}28.277 27.355 35.097
{ca ala h 91}27.687 28.962 38.44
{ca thr h 92}29.266 29.461 41.82
{ca tyr h 93}29.335 26.509 44.151
{ca tyr h 94}29.412 26.987 47.917
{ca cys h 95}29.592 24.554 50.858
{ca ala h 96}27.462 24.903 53.997
{ca asn h 97}26.367 23.078 57.152
{ca trp h 98}22.818 21.784 57.589
{ca asp h 99}21.045 25.122 57.874
{ca gly h 100}23.481 27.77 56.59
{ca asp h 101}24.685 28.827 59.953
{ca tyr h 102}28.082 29.042 58.258
{ca trp h 103}29.177 29.44 54.609
{ca gly h 104}32.22 30.049 52.396
{ca gln h 105}33.457 32.73 49.984
{ca gly h 106}32.143 30.728 47.017
{ca thr h 107}34.239 29.733 43.988
{ca leu h 108}33.334 30.544 40.4
{ca val h 109}33.261 27.677 37.937
{ca thr h 110}33.08 27.774 34.185
{ca val h 111}32.066 25.083 31.799
{ca ser h 112}33.105 26.287 28.355
{ca ala h 113}34.854 24.697 25.389
{ca ala h 114}36.49 28.037 24.671
{ca lys h 115}39.875 28.48 26.346
{ca thr h 116}41.809 30.491 28.833
{ca thr h 117}43.393 33.685 27.553
{ca pro h 118}45.355 36.131 29.661
{ca pro h 119}43.999 39.63 29.85
{ca ser h 120}45.248 42.662 27.958
{ca val h 121}45.455 45.449 30.534
{ca tyr h 122}45.073 48.908 28.981
{ca pro h 123}45.467 52.22 30.811
{ca leu h 124}42.748 54.886 30.812
{ca ala h 125}44.58 58.203 30.954
{ca pro h 126}42.755 61.401 31.765
{ca gly h 127}42.338 63.963 29.02
{ca ser h 128}43.075 67.648 29.66
{ca ala h 129}39.306 68.174 29.723
{ca ala h 130}38.023 69.495 33.081
{ca gln h 131}35.339 68.533 35.62
{ca thr h 132}32.684 69.804 38.025
{ca asn h 133}35.074 69.854 40.991
{ca ser h 134}38.835 69.383 40.52
{ca met h 135}38.843 65.667 41.397
{ca val h 136}40.997 63.511 39.139
{ca thr h 137}39.511 60.218 38.061
{ca leu h 138}41.723 57.598 36.46
{ca gly h 139}40.811 54.204 35.039
{ca cys h 140}42.243 51.011 33.607
{ca leu h 141}40.97 48.5 31.07
{ca val h 142}41.14 44.72 31.144
{ca lys h 143}40.163 43.426 27.741
{ca gly h 144}40.287 39.902 26.39
{ca tyr h 145}40.634 37.292 29.095
{ca phe h 146}39.265 33.87 29.996
{ca pro h 147}37.894 32.806 32.321
{ca glu h 148}36.778 35.146 35.056
{ca pro h 149}37.18 36.455 37.604
{ca val h 150}40.092 38.872 37.888
{ca thr h 151}41.58 40.919 40.658
{ca val h 152}42.021 44.562 39.876
{ca thr h 153}43.466 46.476 42.788
{ca trp h 154}44.819 49.991 42.622
{ca asn h 155}48.368 50.261 43.844
{ca ser h 156}48.085 46.988 45.742
{ca gly h 157}45.24 47.596 48.194
{ca ser h 158}46.823 50.968 48.995
{ca leu h 159}44.272 52.897 46.929
{ca ser h 160}41.114 51.811 48.705
{ca ser h 161}39.842 55.322 49.185
{ca gly h 162}37.524 55.355 46.213
{ca val h 163}37.412 53.019 43.225
{ca his h 164}34.693 51.342 41.148
{ca thr h 165}35.17 47.913 39.482
{ca phe h 166}32.202 47.331 37.165
{ca pro h 167}31.134 43.733 36.606
{ca ala h 168}32.313 42.47 33.182
{ca val h 169}30.501 41.955 29.871
{ca leu h 170}31.158 39.008 27.551
{ca gln h 171}32.164 39.576 23.924
{ca ser h 172}30.657 36.461 22.428
{ca asp h 173}32.969 33.956 24.14
{ca leu h 174}35.445 36.432 25.696
{ca tyr h 175}35.334 38.999 28.437
{ca thr h 176}36.086 42.634 29.159
{ca leu h 177}35.564 44.81 32.254
{ca ser h 178}36.972 48.098 33.595
{ca ser h 179}37.966 49.918 36.786
{ca ser h 180}38.254 53.553 37.79
{ca val h 181}39.753 55.44 40.678
{ca thr h 182}39.014 58.979 41.806
{ca val h 183}41.803 60.973 43.454
{ca pro h 184}42.831 64.446 44.641
{ca ser h 185}43.114 66.736 41.631
{ca ser h 186}46.819 67.004 41.006
{ca pro h 187}47.606 65.186 43.272
{ca arg h 188}47.83 63.641 39.781
{ca pro h 189}51.209 63.191 38.096
{ca ser h 190}52.616 63.708 41.599
{ca glu h 191}51.707 60.464 43.422
{ca thr h 192}51.568 58.061 40.541
{ca val h 193}48.99 55.322 40.696
{ca thr h 194}48.719 51.953 39.045
{ca cys h 195}46.063 49.372 38.346
{ca asn h 196}47.264 46.05 39.724
{ca val h 197}45.218 43.431 37.892
{ca ala h 198}45.293 39.662 38.262
{ca his h 199}44.047 36.758 36.171
{ca pro h 200}43.986 34.074 38.886
{ca ala h 201}43.7 31.165 36.459
{ca ser h 202}45.701 32.527 33.526
{ca ser h 203}48.532 32.739 36.021
{ca thr h 204}49.507 36.213 34.955
{ca lys h 205}50.142 39.174 37.253
{ca val h 206}50.186 42.403 35.269
{ca asp h 207}51.672 45.569 36.646
{ca lys h 208}50.191 48.555 34.83
{ca lys h 209}50.839 52.197 34.567
{ca ile h 210}48.59 55.209 34.802
{ca val h 211}50.757 58.213 35.425
{ca pro h 212}48.221 60.903 34.389
{ca arg h 213}50.021 61.547 31.133
{ca asp h 214}49.271 62.773 27.669
{ca cys h 215}50.552 62.223 24.191
@vectorlist {SS} color= gold master= {SS}
{ca cys h 22}P 35.646 22.565 51.197
{cb cys h 22}34.152 22.66 51.346
{sg cys h 22}33.623 23.915 52.537
{sg cys h 95}32.254 24.94 51.46
{cb cys h 95}30.901 23.82 51.079
{ca cys h 95}29.592 24.554 50.858
{ca cys h 140}P 42.243 51.011 33.607
{cb cys h 140}43.069 50.323 34.692
{sg cys h 140}44.462 49.366 34.119
{sg cys h 195}45.904 49.378 35.551
{cb cys h 195}45.104 49.384 37.159
{ca cys h 195}46.063 49.372 38.346
@balllist off {at O} color=red radius= .13 master= {binding sc}
{od1 asp h 32} 26.271 20.218 61.625
{od2 asp h 32} 27.895 21.619 62.065
@balllist off {at N} color=sky radius= .13 master= {binding sc}
{nd2 asn h 97} 27.772 24.605 60.306
@vectorlist off {binding sc} color= cyan master= {binding sc}
{ca asp h 32}P 27.816 17.974 61.721
{cb asp h 32}28.457 19.31 62.01
{cg asp h 32}27.461 20.459 61.889
{od1 asp h 32}26.271 20.218 61.625
{cg asp h 32}P 27.461 20.459 61.889
{od2 asp h 32}27.895 21.619 62.065
{ca tyr h 33}P 25.669 17.628 58.581
{cb tyr h 33}24.147 17.571 58.549
{cg tyr h 33}23.427 16.644 59.48
{cd1 tyr h 33}24.01 16.04 60.591
{ce1 tyr h 33}23.279 15.194 61.411
{cz tyr h 33}21.937 14.939 61.129
{oh tyr h 33}21.163 14.112 61.904
{cg tyr h 33}P 23.427 16.644 59.48
{cd2 tyr h 33}22.077 16.373 59.222
{ce2 tyr h 33}21.332 15.528 60.03
{cz tyr h 33}21.937 14.939 61.129
{ca tyr h 50}P 24.237 16.964 51.71
{cb tyr h 50}23.443 17.733 52.755
{cg tyr h 50}22.214 17.089 53.312
{cd1 tyr h 50}22.28 16.011 54.185
{ce1 tyr h 50}21.127 15.422 54.691
{cz tyr h 50}19.88 15.925 54.319
{oh tyr h 50}18.721 15.374 54.794
{cg tyr h 50}P 22.214 17.089 53.312
{cd2 tyr h 50}20.956 17.569 52.956
{ce2 tyr h 50}19.786 16.998 53.449
{cz tyr h 50}19.88 15.925 54.319
{ca asn h 97}P 26.367 23.078 57.152
{cb asn h 97}27.258 23.385 58.319
{cg asn h 97}27.124 24.646 59.122
{od1 asn h 97}26.504 25.68 58.816
{cg asn h 97}P 27.124 24.646 59.122
{nd2 asn h 97}27.772 24.605 60.306
{ca trp h 98}P 22.818 21.784 57.589
{cb trp h 98}22.436 21.547 59.071
{cg trp h 98}21.011 21.042 59.073
{cd1 trp h 98}20.013 21.192 59.985
{ne1 trp h 98}18.872 20.548 59.554
{ce2 trp h 98}19.121 19.972 58.344
{ce2 trp h 98}P 19.121 19.972 58.344
{ne1 trp h 98}18.872 20.548 59.554
{cg trp h 98}P 21.011 21.042 59.073
{cd2 trp h 98}20.46 20.258 57.997
{ce2 trp h 98}19.121 19.972 58.344
{cz2 trp h 98}18.29 19.231 57.525
{ch2 trp h 98}18.855 18.785 56.341
{cd2 trp h 98}P 20.46 20.258 57.997
{ce3 trp h 98}20.995 19.793 56.799
{cz3 trp h 98}20.169 19.059 55.987
{ch2 trp h 98}18.855 18.785 56.341
@vectorlist off {Hbonds} color=purple master= {binding sc}
{nz lys y 97}P U 23.622 19.933 62.793
{od1 asp h 32}U 25.634 20.15 61.906
{od2 asp h 32}P U 27.87 22.222 61.71
{nd2 asn h 97}U 27.797 24.002 60.661
@group {lysozyme} 
@vectorlist {Calphas} color= greentint
{ca lys y 1}P 5.401 19.65 82.325
{ca val y 2}3.502 16.538 81.354
{ca phe y 3}1.546 16.917 78.138
{ca gly y 4}-1.91 15.479 77.462
{ca arg y 5}-1.889 13.421 74.248
{ca cys y 6}-3.953 16.022 72.35
{ca glu y 7}-2.077 18.954 73.91
{ca leu y 8}1.284 17.878 72.562
{ca ala y 9}-0.376 16.612 69.391
{ca ala y 10}-1.283 20.209 68.536
{ca ala y 11}1.859 21.915 69.811
{ca met y 12}3.773 19.566 67.538
{ca lys y 13}1.59 20.55 64.594
{ca arg y 14}2.271 24.164 65.604
{ca his y 15}5.954 23.316 65.459
{ca gly y 16}5.635 22.029 61.917
{ca leu y 17}6.209 18.311 62.434
{ca asp y 18}3.076 17.042 60.664
{ca asn y 19}4.628 15.331 57.613
{ca tyr y 20}7.936 16.819 58.618
{ca arg y 21}10.002 15.155 55.95
{ca gly y 22}7.673 12.224 55.415
{ca tyr y 23}6.463 11.483 58.923
{ca ser y 24}2.856 12.004 59.868
{ca leu y 25}2.235 13.922 63.106
{ca gly y 26}1.164 10.656 64.728
{ca asn y 27}4.768 9.374 64.717
{ca trp y 28}5.804 12.251 66.978
{ca val y 29}2.978 12.095 69.494
{ca cys y 30}3.589 8.373 69.629
{ca ala y 31}7.368 8.313 69.92
{ca ala y 32}7.158 10.716 72.877
{ca lys y 33}4.512 8.685 74.621
{ca phe y 34}6.558 5.495 74.744
{ca glu y 35}9.887 7.359 74.997
{ca ser y 36}9.246 9.816 77.858
{ca asn y 37}5.615 9.47 78.85
{ca phe y 38}4.977 12.959 77.474
{ca asn y 39}7.189 14.228 80.291
{ca thr y 40}9.496 17.091 79.344
{ca gln y 41}11.554 16.267 82.453
{ca ala y 42}12.216 12.574 81.888
{ca thr y 43}15.879 11.612 82.062
{ca asn y 44}17.527 8.2 81.862
{ca arg y 45}21.248 7.632 81.83
{ca asn y 46}22.785 5.288 79.294
{ca thr y 47}25.14 2.961 81.154
{ca asp y 48}27.573 4.157 78.529
{ca gly y 49}28.006 7.307 80.599
{ca ser y 50}25.418 9.129 78.504
{ca thr y 51}22.102 10.642 79.538
{ca asp y 52}18.716 11.155 77.834
{ca tyr y 53}16.744 14.417 77.845
{ca gly y 54}13.108 15.418 77.449
{ca ile y 55}10.159 14.486 75.274
{ca leu y 56}12.007 12.653 72.445
{ca gln y 57}14.889 11.828 74.821
{ca ile y 58}17.728 13.36 72.814
{ca asn y 59}21.054 11.681 73.743
{ca ser y 60}24.127 13.082 75.518
{ca arg y 61}26.504 11.705 72.873
{ca trp y 62}25.876 13.115 69.474
{ca trp y 63}23.253 15.739 70.413
{ca cys y 64}23.636 17.956 73.487
{ca asn y 65}26.224 18.812 76.121
{ca asp y 66}25.777 17.696 79.705
{ca gly y 67}29.443 18.171 80.597
{ca arg y 68}29.326 14.585 81.895
{ca thr y 69}30.149 13.061 78.543
{ca pro y 70}33.436 13.608 76.716
{ca gly y 71}32.966 12.05 73.249
{ca ser y 72}30.372 14.766 73.271
{ca arg y 73}29.598 16.054 69.801
{ca asn y 74}26.831 18.631 69.973
{ca leu y 75}25.344 18.303 66.479
{ca cys y 76}22.425 20.34 67.852
{ca asn y 77}24.595 23.02 69.555
{ca ile y 78}22.145 23.012 72.498
{ca pro y 79}23.048 22.638 76.165
{ca cys y 80}20.97 19.616 77.163
{ca ser y 81}19.398 21.554 80.042
{ca ala y 82}17.601 23.351 77.218
{ca leu y 83}15.847 20.022 76.47
{ca leu y 84}14.365 19.666 79.984
{ca ser y 85}12.334 22.893 79.626
{ca ser y 86}8.653 23.756 79.515
{ca asp y 87}9.408 24.856 75.965
{ca ile y 88}9.974 22.085 73.426
{ca thr y 89}11.221 24.506 70.755
{ca ala y 90}14.656 23.304 71.642
{ca ser y 91}13.718 19.631 71.503
{ca val y 92}11.695 19.826 68.323
{ca asn y 93}14.358 21.807 66.494
{ca cys y 94}16.987 19.153 67.249
{ca ala y 95}14.48 16.404 66.379
{ca lys y 96}13.825 18.105 63.051
{ca lys y 97}17.607 17.655 62.763
{ca ile y 98}18.24 14.038 63.774
{ca val y 99}15.388 12.729 61.666
{ca ser y 100}17.115 14.256 58.654
{ca asp y 101}19.671 11.415 58.187
{ca gly y 102}18.267 8.248 56.542
{ca asn y 103}17.6 6.637 59.919
{ca gly y 104}14.822 9.202 60.207
{ca met y 105}12.674 7.923 63.065
{ca asn y 106}14.675 4.678 63.387
{ca ala y 107}16.83 6.832 65.632
{ca trp y 108}13.953 6.507 68.078
{ca val y 109}13.82 3.017 69.554
{ca ala y 110}10.438 3.103 71.273
{ca trp y 111}9.282 4.342 67.879
{ca arg y 112}11.113 1.484 66.219
{ca asn y 113}9.977 -1.118 68.778
{ca arg y 114}6.479 -0.03 69.815
{ca cys y 115}5.416 2.889 67.582
{ca lys y 116}6.608 2.18 64.053
{ca gly y 117}4.132 0.689 61.594
{ca thr y 118}1.083 0.888 63.847
{ca asp y 119}-1.945 2.908 62.615
{ca val y 120}-0.348 6.058 64.099
{ca gln y 121}-3.341 8.119 63.004
{ca ala y 122}-4.491 6.735 66.34
{ca trp y 123}-2.283 9.095 68.292
{ca ile y 124}-3.927 12.131 66.627
{ca arg y 125}-7.602 11.057 66.734
{ca gly y 126}-10.045 12.855 69.057
{ca cys y 127}-7.794 15.897 69.095
{ca arg y 128}-8.688 19.461 68.251
{ca leu y 129}-5.824 20.309 65.926
@subgroup dominant {Gln 121}
@vectorlist {Gln 121} color=sky 
{ca gln y 121}P -3.341 8.119 63.004
{cb gln y 121}-4.385 7.812 61.958
{cg gln y 121}-4.131 8.415 60.589
{cd gln y 121}-5.43 8.854 59.941
{oe1 gln y 121}-6.21 8.044 59.445
{cd gln y 121}P -5.43 8.854 59.941
{ne2 gln y 121}-5.636 10.174 59.973
@subgroup dominant {Lys 97}
@balllist {at N} color=sky radius= .13
{nz lys y 97} 22.985 19.865 63.074
@vectorlist {Lys 97} color=sea
{ca lys y 97}P 17.607 17.655 62.763
{cb lys y 97}18.571 18.424 63.682
{cg lys y 97}19.998 17.902 63.642
{cd lys y 97}20.868 18.708 62.693
{ce lys y 97}22.324 18.542 63.101
{nz lys y 97}22.985 19.865 63.074

@kinemage 4
@caption  (B&T Fig. 15.18, 15.20)
MHC class II molecule with bound peptide (blues).  MHC alpha1-alpha2 chain is in greens, and beta1-beta2 in yellowtint and orange. (from PDB file 1AQD) 
@onewidth
@viewid {Fig. 15.18}
@zoom 1.1
@zslab 200
@center 10.371 -.389 33.383
@matrix
-0.068764 -.290823 -.954303 -.141736 .949712 -.279211 .987513 .116059 -.106527
@2viewid {Fig. 15.20d}
@2zoom 1.69
@2zslab 90
@2center 9.147 24.848 43.15
@2matrix
-0.009663 -.969528 -.24479 .166923 -.242931 .955574 -.985923 -.031628 .164183
@master {SS}
@master {side ch}
@group {peptide}
@vectorlist {main ch} color= bluetint
{n gly c 2}P -11.388 18.828 43.911
{"}-11.388 18.828 43.911
{ca gly c 2}-11.677 20.150 43.341
{c gly c 2}-10.724 20.895 42.407
{o gly c 2}-9.985 21.797 42.796
{c gly c 2}P -10.724 20.895 42.407
{n ser c 3}-10.796 20.476 41.155
{ca ser c 3}-10.068 21.126 40.058
{c ser c 3}-8.573 21.493 40.079
{o ser c 3}-7.711 20.656 39.828
{c ser c 3}P -8.573 21.493 40.079
{n asp c 4}-8.282 22.774 40.300
{ca asp c 4}-6.928 23.318 40.255
{c asp c 4}-5.824 22.490 40.888
{o asp c 4}-5.768 22.228 42.112
{c asp c 4}P -5.824 22.490 40.888
{n trp c 5}-4.993 22.017 39.984
{ca trp c 5}-3.835 21.245 40.318
{c trp c 5}-2.792 22.346 40.529
{o trp c 5}-2.530 23.141 39.627
{c trp c 5}P -2.792 22.346 40.529
{n arg c 6}-2.206 22.412 41.710
{ca arg c 6}-1.228 23.442 41.981
{c arg c 6}0.217 23.057 41.709
{o arg c 6}0.543 21.893 41.675
{c arg c 6}P 0.217 23.057 41.709
{n phe c 7}1.093 24.034 41.534
{ca phe c 7}2.485 23.750 41.273
{c phe c 7}3.314 24.798 41.976
{o phe c 7}2.777 25.829 42.350
{c phe c 7}P 3.314 24.798 41.976
{n leu c 8}4.595 24.507 42.213
{ca leu c 8}5.534 25.428 42.849
{c leu c 8}6.438 25.945 41.747
{o leu c 8}6.483 25.385 40.631
{c leu c 8}P 6.438 25.945 41.747
{n arg c 9}7.113 27.058 41.998
{ca arg c 9}8.003 27.581 40.966
{c arg c 9}9.350 27.688 41.596
{o arg c 9}9.460 27.754 42.810
{c arg c 9}P 9.350 27.688 41.596
{n gly c 10}10.387 27.615 40.792
{ca gly c 10}11.703 27.693 41.365
{c gly c 10}12.129 29.141 41.455
{o gly c 10}11.750 29.999 40.639
{c gly c 10}P 12.129 29.141 41.455
{n tyr c 11}12.946 29.387 42.463
{ca tyr c 11}13.496 30.713 42.712
{c tyr c 11}14.760 30.941 41.858
{o tyr c 11}15.349 29.998 41.275
{c tyr c 11}P 14.760 30.941 41.858
{n his c 12}15.217 32.189 41.798
{ca his c 12}16.381 32.458 40.997
{c his c 12}17.732 32.146 41.657
{o his c 12}17.969 32.413 42.829
{c his c 12}P 17.732 32.146 41.657
{n gln c 13}18.569 31.450 40.906
{ca gln c 13}19.892 31.077 41.360
{c gln c 13}20.705 32.312 41.677
{o gln c 13}20.559 33.372 41.045
{c gln c 13}P 20.705 32.312 41.677
{n tyr c 14}21.607 32.146 42.625
{ca tyr c 14}22.513 33.197 43.004
{c tyr c 14}23.463 33.447 41.825
{o tyr c 14}24.287 32.581 41.508
{c tyr c 14}P 23.463 33.447 41.825
{n ala c 15}23.332 34.601 41.166
{ca ala c 15}24.193 34.951 40.023
{c ala c 15}25.418 35.808 40.391
@vectorlist {side ch} color= sky
{ca ser c 3}P -10.068 21.126 40.058
{cb ser c 3}-10.834 22.378 39.630
{og ser c 3}-11.149 22.388 38.232
{ca asp c 4}P -6.928 23.318 40.255
{cb asp c 4}-6.875 24.806 40.712
{cg asp c 4}-6.854 24.976 42.238
{od1 asp c 4}-7.729 24.368 42.907
{cg asp c 4}P -6.854 24.976 42.238
{od2 asp c 4}-5.964 25.718 42.750
{ca trp c 5}P -3.835 21.245 40.318
{cb trp c 5}-3.455 20.336 39.125
{cg trp c 5}-2.364 19.381 39.465
{cd1 trp c 5}-1.029 19.606 39.347
{ne1 trp c 5}-0.331 18.623 39.991
{ce2 trp c 5}-1.207 17.715 40.524
{ne1 trp c 5}-0.331 18.623 39.991
{cg trp c 5}P -2.364 19.381 39.465
{cd2 trp c 5}-2.501 18.151 40.193
{ce2 trp c 5}-1.207 17.715 40.524
{cz2 trp c 5}-0.967 16.553 41.272
{ch2 trp c 5}-2.053 15.830 41.687
{cd2 trp c 5}P -2.501 18.151 40.193
{ce3 trp c 5}-3.598 17.393 40.619
{cz3 trp c 5}-3.358 16.230 41.371
{ch2 trp c 5}-2.053 15.830 41.687
{ca arg c 6}P -1.228 23.442 41.981
{cb arg c 6}-1.390 23.894 43.413
{cg arg c 6}-2.684 24.639 43.641
{cd arg c 6}-2.891 24.928 45.097
{ne arg c 6}-4.171 25.573 45.233
{cz arg c 6}-4.769 25.841 46.381
{nh1 arg c 6}-4.211 25.526 47.542
{cz arg c 6}P -4.769 25.841 46.381
{nh2 arg c 6}-5.948 26.431 46.344
{ca phe c 7}P 2.485 23.750 41.273
{cb phe c 7}2.760 23.784 39.776
{cg phe c 7}2.801 25.150 39.197
{cd1 phe c 7}1.659 25.931 39.134
{ce1 phe c 7}1.699 27.214 38.547
{cz phe c 7}2.881 27.704 38.026
{cg phe c 7}P 2.801 25.150 39.197
{cd2 phe c 7}3.979 25.659 38.670
{ce2 phe c 7}4.014 26.933 38.089
{cz phe c 7}2.881 27.704 38.026
{ca leu c 8}P 5.534 25.428 42.849
{cb leu c 8}6.374 24.715 43.884
{cg leu c 8}5.568 24.230 45.064
{cd1 leu c 8}6.437 23.780 46.177
{cg leu c 8}P 5.568 24.230 45.064
{cd2 leu c 8}4.775 25.350 45.533
{ca arg c 9}P 8.003 27.581 40.966
{cb arg c 9}7.550 28.939 40.416
{cg arg c 9}8.416 29.415 39.214
{cd arg c 9}8.026 30.791 38.614
{ne arg c 9}7.014 30.735 37.553
{cz arg c 9}5.703 30.682 37.779
{nh1 arg c 9}5.220 30.668 39.020
{cz arg c 9}P 5.703 30.682 37.779
{nh2 arg c 9}4.852 30.714 36.778
{ca tyr c 11}P 13.496 30.713 42.712
{cb tyr c 11}13.796 30.856 44.190
{cg tyr c 11}12.546 30.591 45.032
{cd1 tyr c 11}11.553 31.507 45.183
{ce1 tyr c 11}10.417 31.225 45.996
{cz tyr c 11}10.293 30.012 46.652
{oh tyr c 11}9.265 29.766 47.471
{cg tyr c 11}P 12.546 30.591 45.032
{cd2 tyr c 11}12.465 29.366 45.752
{ce2 tyr c 11}11.361 29.123 46.517
{cz tyr c 11}10.293 30.012 46.652
{ca his c 12}P 16.381 32.458 40.997
{cb his c 12}16.282 33.854 40.407
{cg his c 12}15.247 33.954 39.332
{nd1 his c 12}15.500 33.577 38.026
{ce1 his c 12}14.413 33.762 37.300
{ne2 his c 12}13.458 34.239 38.090
{ce1 his c 12}14.413 33.762 37.300
{cg his c 12}P 15.247 33.954 39.332
{cd2 his c 12}13.956 34.367 39.363
{ne2 his c 12}13.458 34.239 38.090
{ce1 his c 12}14.413 33.762 37.300
{ca gln c 13}P 19.892 31.077 41.360
{cb gln c 13}20.654 30.363 40.240
{cg gln c 13}20.188 28.989 39.891
{cd gln c 13}20.774 27.968 40.795
{oe1 gln c 13}21.846 27.455 40.533
{cd gln c 13}P 20.774 27.968 40.795
{ne2 gln c 13}20.094 27.683 41.895
{ca tyr c 14}P 22.513 33.197 43.004
{cb tyr c 14}23.307 32.719 44.203
{cg tyr c 14}24.361 33.679 44.613
{cd1 tyr c 14}24.069 34.734 45.470
{ce1 tyr c 14}25.034 35.636 45.836
{cz tyr c 14}26.317 35.487 45.332
{oh tyr c 14}27.321 36.381 45.670
{cg tyr c 14}P 24.361 33.679 44.613
{cd2 tyr c 14}25.646 33.551 44.130
{ce2 tyr c 14}26.617 34.442 44.478
{cz tyr c 14}26.317 35.487 45.332
{ca ala c 15}P 24.193 34.951 40.023
{cb ala c 15}23.386 35.638 38.930
@group {MHC classII}
@subgroup {a1-a2} dominant
@vectorlist {a1-a2} color= yellowtint
{ca glu a 3}P 5.400 5.965 53.288
{"}5.400 5.965 53.288
{ca glu a 4}2.113 5.722 51.349
{ca his a 5}2.456 7.913 48.233
{ca val a 6}4.693 10.479 46.604
{ca ile a 7}3.635 13.078 44.041
{ca ile a 8}6.568 14.551 42.145
{ca gln a 9}6.680 17.795 40.176
{ca ala a 10}9.627 17.417 37.870
{ca glu a 11}11.054 19.833 35.326
{ca phe a 12}14.229 20.086 33.316
{ca tyr a 13}15.980 22.303 30.868
{ca leu a 14}18.732 20.976 28.628
{ca asn a 15}21.365 22.712 26.518
{ca pro a 16}22.359 23.050 23.839
{ca asp a 17}19.155 21.329 22.888
{ca gln a 18}17.058 23.942 24.627
{ca ser a 19}14.603 21.193 25.459
{ca gly a 20}12.468 21.583 28.536
{ca glu a 21}9.936 19.480 30.406
{ca phe a 22}7.238 19.969 32.992
{ca met a 23}5.321 17.037 34.507
{ca phe a 24}3.702 15.401 37.529
{ca asp a 25}4.313 11.986 38.834
{ca phe a 26}2.277 9.853 41.165
{ca asp a 27}4.092 6.745 42.437
{ca gly a 28}6.007 6.258 39.211
{ca asp a 29}3.253 7.155 36.885
{ca glu a 30}2.899 10.347 34.878
{ca ile a 31}-0.222 12.303 35.843
{ca phe a 32}0.271 14.835 33.035
{ca his a 33}2.947 16.921 31.282
{ca val a 34}2.739 20.303 29.508
{ca asp a 35}3.267 20.337 25.755
{ca met a 36}5.648 23.337 25.606
{ca ala a 37}5.122 23.802 21.841
{ca lys a 38}1.309 23.602 21.869
{ca lys a 39}1.410 25.185 25.302
{ca glu a 40}-1.117 22.661 26.608
{ca thr a 41}-1.657 20.279 29.501
{ca val a 42}-1.667 16.649 28.343
{ca trp a 43}-3.192 14.156 30.880
{ca arg a 44}-1.665 10.632 30.899
{ca leu a 45}-5.155 9.109 31.119
{ca glu a 46}-7.843 11.219 29.387
{ca glu a 47}-10.162 10.522 32.274
{ca phe a 48}-7.812 12.457 34.625
{ca gly a 49}-8.710 15.747 33.011
{ca arg a 50}-12.366 15.321 34.096
{ca phe a 51}-11.285 15.623 37.653
{ca ala a 52}-8.638 18.288 37.712
{ca ser a 53}-7.431 21.319 35.812
{ca phe a 54}-3.940 22.717 35.248
{ca glu a 55}-3.145 26.034 33.571
{ca ala a 56}-0.273 25.374 31.169
{ca gln a 57}1.081 28.949 31.061
{ca gly a 58}2.480 28.419 34.548
{ca ala a 59}4.636 25.557 33.442
{ca leu a 60}5.941 27.696 30.618
{ca ala a 61}7.046 30.291 33.182
{ca asn a 62}8.696 27.662 35.266
{ca ile a 63}10.660 26.448 32.282
{ca ala a 64}11.976 29.966 31.781
{ca val a 65}13.427 30.248 35.300
{ca asp a 66}14.916 26.769 34.636
{ca lys a 67}16.506 27.921 31.416
{ca ala a 68}17.917 30.878 33.297
{ca asn a 69}19.154 28.924 36.261
{ca leu a 70}20.805 26.412 33.962
{ca glu a 71}22.898 29.174 32.393
{ca ile a 72}23.990 30.360 35.841
{ca met a 73}24.914 26.823 36.921
{ca thr a 74}26.734 25.810 33.755
{ca lys a 75}29.081 28.735 34.183
{ca arg a 76}29.217 28.280 37.996
{ca ser a 77}30.428 24.762 37.367
{ca asn a 78}33.331 26.022 35.213
{ca tyr a 79}31.208 24.722 32.407
{ca thr a 80}31.174 21.047 33.359
{ca pro a 81}29.060 19.206 30.785
{ca ile a 82}26.858 16.188 31.510
{ca thr a 83}28.332 12.676 31.347
@vectorlist {a2} color= orange
{ca thr a 83}P 28.332 12.676 31.347
{ca asn a 84}26.235 10.496 29.091
{ca val a 85}24.820 7.345 30.765
{ca pro a 86}23.477 5.008 28.001
{ca pro a 87}20.090 3.377 28.556
{ca glu a 88}19.096 -0.137 29.590
{ca val a 89}16.456 -1.299 27.053
{ca thr a 90}13.826 -4.017 27.517
{ca val a 91}11.070 -5.088 25.215
{ca leu a 92}7.966 -6.854 26.577
{ca thr a 93}4.304 -7.245 25.938
{ca asn a 94}1.260 -6.117 27.873
{ca ser a 95}0.174 -9.669 28.490
{ca pro a 96}0.857 -13.320 27.489
{ca val a 97}0.955 -13.534 23.778
{ca glu a 98}-1.655 -15.582 22.025
{ca leu a 99}-1.639 -15.840 18.279
{ca arg a 100}-4.323 -13.709 16.706
{ca glu a 101}-4.895 -11.891 19.920
{ca pro a 102}-4.151 -8.131 19.736
{ca asn a 103}-1.331 -7.302 22.188
{ca val a 104}1.083 -4.453 22.900
{ca leu a 105}4.887 -4.393 22.685
{ca ile a 106}6.379 -2.171 25.350
{ca cys a 107}9.975 -0.854 24.849
{ca phe a 108}11.251 0.184 28.255
{ca ile a 109}14.236 2.573 28.223
{ca asp a 110}15.735 3.120 31.693
{ca lys a 111}18.696 4.603 33.605
{ca phe a 112}19.886 7.165 31.035
{ca thr a 113}20.906 10.812 30.818
{ca pro a 114}20.664 13.270 29.236
{ca pro a 115}16.983 13.045 28.291
{ca val a 116}17.383 12.770 24.510
{ca val a 117}16.863 9.371 22.740
{ca asn a 118}15.706 8.284 19.283
{ca val a 119}13.396 5.217 19.257
{ca thr a 120}12.169 3.251 16.248
{ca trp a 121}9.977 0.169 16.086
{ca leu a 122}11.057 -2.123 13.282
{ca arg a 123}8.790 -4.744 11.804
{ca asn a 124}10.801 -7.400 9.900
{ca gly a 125}13.481 -4.740 9.824
{ca lys a 126}11.202 -2.103 8.372
{ca pro a 127}10.064 0.726 10.690
{ca val a 128}6.495 0.690 12.086
{ca thr a 129}4.416 3.762 13.056
{ca thr a 130}0.823 2.546 13.075
{ca gly a 131}-0.647 3.072 16.539
{ca val a 132}2.650 3.774 18.274
{ca ser a 133}2.874 6.041 21.369
{ca glu a 134}5.418 6.774 24.072
{ca thr a 135}5.724 8.608 27.373
{ca val a 136}7.790 11.720 28.130
{ca phe a 137}10.955 11.429 30.289
{ca leu a 138}10.040 10.093 33.704
{ca pro a 139}12.274 11.113 36.602
{ca arg a 140}14.273 8.599 38.642
{ca glu a 141}15.650 9.046 42.227
{ca asp a 142}19.208 8.779 40.908
{ca his a 143}18.365 11.673 38.611
{ca leu a 144}18.536 9.623 35.457
{ca phe a 145}15.381 9.173 33.376
{ca arg a 146}12.822 6.513 32.237
{ca lys a 147}10.674 6.368 29.085
{ca phe a 148}8.251 3.915 27.420
{ca his a 149}7.356 3.291 23.813
{ca tyr a 150}4.343 1.241 22.779
{ca leu a 151}3.499 -0.805 19.709
{ca pro a 152}-0.014 -2.364 19.432
{ca phe a 153}0.398 -5.499 17.360
{ca leu a 154}-1.267 -8.695 16.275
{ca pro a 155}0.789 -11.732 17.368
{ca ser a 156}2.084 -13.980 14.549
{ca thr a 157}4.884 -16.427 13.766
{ca glu a 158}5.550 -14.646 10.500
{ca asp a 159}7.534 -11.688 11.690
{ca val a 160}10.347 -10.679 14.253
{ca tyr a 161}10.339 -7.245 16.198
{ca asp a 162}12.980 -4.829 17.422
{ca cys a 163}12.938 -1.660 19.409
{ca arg a 164}15.823 0.514 18.052
{ca val a 165}17.254 2.986 20.558
{ca glu a 166}19.817 5.732 19.799
{ca his a 167}21.436 7.619 22.712
{ca trp a 168}24.682 9.642 22.940
{ca gly a 169}26.099 7.256 25.540
{ca leu a 170}25.793 4.261 23.119
{ca asp a 171}28.643 3.360 20.744
{ca glu a 172}25.972 2.224 18.218
{ca pro a 173}22.128 2.030 18.025
{ca leu a 174}20.790 -0.675 20.300
{ca leu a 175}18.234 -2.971 18.712
{ca lys a 176}16.234 -5.093 21.276
{ca his a 177}14.448 -8.040 19.665
{ca trp a 178}11.076 -9.708 20.249
{ca glu a 179}9.458 -12.524 18.376
{ca phe a 180}6.462 -14.846 19.126
{ca asp a 181}7.453 -18.294 20.236
@vectorlist {SS} color= yellow master= {SS}
{ca cys a 107}P 9.975 -0.854 24.849
{cb cys a 107}10.416 -0.105 23.617
{sg cys a 107}12.221 0.069 23.450
{sg cys a 163}12.433 0.107 21.438
{cb cys a 163}12.620 -1.621 20.906
{ca cys a 163}12.938 -1.660 19.409
@vectorlist {sc} color= gold master= {side ch} off
{ca asn a 62}P 8.696 27.662 35.266
{cb asn a 62}7.979 26.449 35.855
{cg asn a 62}7.222 26.793 37.092
{od1 asn a 62}6.581 27.831 37.123
{cg asn a 62}P 7.222 26.793 37.092
{nd2 asn a 62}7.288 25.942 38.130
{ca asn a 69}P 19.154 28.924 36.261
{cb asn a 69}18.260 28.280 37.346
{cg asn a 69}17.354 29.304 38.078
{od1 asn a 69}17.534 30.506 37.959
{cg asn a 69}P 17.354 29.304 38.078
{nd2 asn a 69}16.404 28.820 38.847
{ca arg a 76}P 29.217 28.280 37.996
{cb arg a 76}28.030 28.246 38.937
{cg arg a 76}28.478 28.294 40.366
{cd arg a 76}27.345 28.048 41.356
{ne arg a 76}26.204 28.974 41.263
{cz arg a 76}25.178 28.985 42.126
{nh1 arg a 76}25.149 28.133 43.147
{cz arg a 76}P 25.178 28.985 42.126
{nh2 arg a 76}24.158 29.820 41.955
@subgroup {b1-b2} dominant
@vectorlist {Calphas} color= sea
{ca arg b 4}P 28.822 19.092 21.654
{"}28.822 19.092 21.654
{ca pro b 5}28.603 19.057 25.439
{ca arg b 6}25.179 19.113 27.144
{ca phe b 7}24.436 20.747 30.403
{ca leu b 8}21.255 19.819 32.239
{ca trp b 9}19.212 21.384 34.980
{ca gln b 10}16.370 19.689 36.908
{ca leu b 11}14.114 20.930 39.643
{ca lys b 12}11.911 18.597 41.639
{ca phe b 13}9.211 19.111 44.274
{ca glu b 14}8.409 15.835 46.074
{ca cys b 15}5.389 15.491 48.329
{ca his b 16}5.729 12.395 50.527
{ca phe b 17}2.532 11.268 52.273
{ca phe b 18}2.313 9.012 55.353
{ca asn b 19}-0.939 7.671 56.786
{ca gly b 20}-3.063 9.638 54.332
{ca thr b 21}-2.025 13.243 54.679
{ca glu b 22}-1.458 12.709 58.394
{ca arg b 23}2.300 13.148 57.865
{ca val b 24}3.533 14.999 54.746
{ca arg b 25}7.118 15.975 53.812
{ca leu b 26}8.042 18.270 50.910
{ca leu b 27}11.429 18.215 49.168
{ca glu b 28}12.611 20.690 46.581
{ca arg b 29}15.774 19.504 44.846
{ca cys b 30}17.977 21.186 42.326
{ca ile b 31}20.140 18.968 40.226
{ca tyr b 32}22.876 20.131 37.865
{ca asn b 33}23.470 17.338 35.372
{ca gln b 34}23.357 14.314 37.730
{ca glu b 35}24.452 15.985 40.965
{ca glu b 36}21.840 17.376 43.358
{ca ser b 37}23.343 20.681 44.498
{ca val b 38}20.780 22.204 46.923
{ca arg b 39}17.474 21.072 48.472
{ca phe b 40}14.635 22.316 50.698
{ca asp b 41}13.393 19.684 53.151
{ca ser b 42}10.153 20.567 54.955
{ca asp b 43}11.496 18.665 57.943
{ca val b 44}14.438 21.012 58.046
{ca gly b 45}12.687 24.262 57.318
{ca glu b 46}15.394 25.745 55.162
{ca tyr b 47}17.672 25.179 52.185
{ca arg b 48}20.924 23.292 52.518
{ca ala b 49}23.689 22.925 50.012
{ca val b 50}23.972 19.232 49.048
{ca thr b 51}27.182 19.933 47.170
{ca glu b 52}29.430 22.981 47.255
{ca leu b 53}28.035 24.101 43.854
{ca gly b 54}24.801 24.737 45.676
{ca arg b 55}26.253 26.596 48.650
{ca pro b 56}25.587 30.009 47.026
{ca asp b 57}21.932 29.163 46.521
{ca ala b 58}21.487 27.855 50.028
{ca glu b 59}23.096 30.980 51.519
{ca tyr b 60}21.055 33.174 49.229
{ca trp b 61}17.662 31.537 49.377
{ca asn b 62}17.850 31.233 53.132
{ca ser b 63}18.442 34.966 53.180
{ca gln b 64}15.190 35.511 51.211
{ca lys b 65}12.662 34.939 53.954
{ca asp b 66}9.437 35.322 52.107
{ca leu b 67}10.592 32.388 49.991
{ca leu b 68}11.183 30.273 53.188
{ca glu b 69}7.770 31.029 54.580
{ca gln b 70}6.172 30.208 51.234
{ca arg b 71}7.965 26.764 51.213
{ca arg b 72}7.280 25.976 54.835
{ca ala b 73}3.558 26.316 53.961
{ca ala b 74}3.643 24.340 50.696
{ca val b 75}2.991 21.223 52.761
{ca asp b 76}-0.631 22.402 53.030
{ca thr b 77}-1.138 24.766 50.110
{ca tyr b 78}0.604 22.478 47.609
{ca cys b 79}1.118 19.009 48.974
{ca arg b 80}-2.169 18.329 50.798
{ca his b 81}-4.135 20.310 48.213
{ca asn b 82}-2.933 18.264 45.211
{ca tyr b 83}-3.347 14.995 47.085
{ca gly b 84}-6.832 16.277 47.715
{ca val b 85}-7.501 17.081 44.083
{ca gly b 86}-5.922 13.901 42.818
{ca glu b 87}-7.139 11.336 45.308
{ca ser b 88}-10.140 10.018 43.351
{ca phe b 89}-8.176 8.930 40.258
{ca thr b 90}-4.801 8.078 41.873
{ca val b 91}-4.826 7.018 45.544
{ca gln b 92}-8.084 5.167 44.922
{ca arg b 93}-7.402 3.764 41.469
{ca arg b 94}-8.154 0.077 41.313
@vectorlist {b2} color= greentint
{ca arg b 94}P -8.154 0.077 41.313
{ca val b 95}-7.693 -2.263 38.399
{ca glu b 96}-8.054 -6.051 38.830
{ca pro b 97}-5.313 -8.400 37.654
{ca lys b 98}-5.664 -10.855 34.729
{ca val b 99}-4.253 -14.176 36.086
{ca thr b 100}-2.914 -16.840 33.629
{ca val b 101}-1.100 -20.103 34.401
{ca tyr b 102}0.958 -21.943 31.879
{ca pro b 103}4.048 -24.165 31.712
{ca ser b 104}6.965 -22.349 30.109
{ca lys b 105}7.947 -25.308 27.978
{ca thr b 106}6.122 -28.201 26.324
{ca gln b 107}8.698 -30.752 27.669
{ca pro b 108}6.579 -33.948 28.506
{ca leu b 109}5.758 -35.273 31.973
{ca gln b 110}8.181 -36.113 34.686
{ca his b 111}10.647 -33.606 33.410
{ca his b 112}11.459 -30.468 35.264
{ca asn b 113}9.320 -27.531 34.161
{ca leu b 114}8.724 -23.901 35.103
{ca leu b 115}5.126 -23.130 35.798
{ca val b 116}4.407 -19.507 35.089
{ca cys b 117}1.777 -17.510 36.905
{ca ser b 118}1.211 -14.364 34.815
{ca val b 119}-0.508 -11.534 36.748
{ca ser b 120}-1.146 -8.474 34.711
{ca gly b 121}-2.966 -5.162 34.225
{ca phe b 122}-3.374 -4.485 37.913
{ca tyr b 123}-3.356 -1.230 39.864
{ca pro b 124}-2.124 -0.545 42.447
{ca gly b 125}1.297 -2.143 42.710
{ca ser b 126}1.059 -4.181 45.912
{ca ile b 127}-0.073 -7.785 45.366
{ca glu b 128}0.734 -11.275 46.843
{ca val b 129}1.049 -14.205 44.404
{ca arg b 130}1.410 -17.646 46.059
{ca trp b 131}1.861 -21.125 44.642
{ca phe b 132}0.200 -24.282 45.912
{ca arg b 133}0.647 -27.988 45.036
{ca asn b 134}-2.188 -30.283 46.039
{ca gly b 135}-3.438 -27.479 48.300
{ca gln b 136}-0.162 -27.120 50.112
{ca glu b 137}1.696 -23.836 49.658
{ca glu b 138}4.965 -24.122 47.792
{ca lys b 139}7.545 -21.594 48.955
{ca ala b 140}10.713 -23.017 47.407
{ca gly b 141}11.678 -22.938 43.770
{ca val b 142}9.821 -19.717 43.147
{ca val b 143}11.374 -17.339 40.632
{ca ser b 144}9.622 -13.902 40.362
{ca thr b 145}10.239 -11.012 37.942
{ca gly b 146}9.124 -8.665 40.654
{ca leu b 147}6.674 -5.910 39.986
{ca ile b 148}6.901 -4.353 36.535
{ca gln b 149}5.477 -0.921 35.977
{ca asn b 150}4.131 -0.634 32.372
{ca gly b 151}4.033 3.182 32.330
{ca asp b 152}0.239 3.339 31.588
{ca trp b 153}-1.220 3.075 35.137
{ca thr b 154}-1.062 -0.721 35.217
{ca phe b 155}1.424 -3.296 36.542
{ca gln b 156}2.334 -6.909 35.718
{ca thr b 157}4.417 -9.620 37.368
{ca leu b 158}5.353 -13.247 36.480
{ca val b 159}5.875 -15.756 39.261
{ca met b 160}7.361 -19.106 38.287
{ca leu b 161}7.411 -22.361 40.130
{ca glu b 162}10.086 -24.931 39.482
{ca thr b 163}8.171 -28.238 39.230
{ca val b 164}8.556 -31.822 38.002
{ca pro b 165}4.863 -32.532 37.356
{ca arg b 166}3.583 -35.956 38.036
{ca ser b 167}0.190 -37.160 36.869
{ca gly b 168}-2.870 -35.641 38.482
{ca glu b 169}-0.940 -33.049 40.448
{ca val b 170}-3.092 -29.874 40.812
{ca tyr b 171}-1.048 -26.582 40.909
{ca thr b 172}-2.721 -23.295 41.948
{ca cys b 173}-1.543 -19.703 41.718
{ca gln b 174}-3.296 -17.542 44.294
{ca val b 175}-3.373 -13.762 43.916
{ca glu b 176}-4.251 -11.293 46.662
{ca his b 177}-4.772 -7.673 45.503
{ca pro b 178}-6.749 -4.660 46.907
{ca ser b 179}-8.977 -4.638 43.848
{ca val b 180}-10.585 -7.918 44.971
{ca thr b 181}-12.590 -9.141 48.042
{ca ser b 182}-11.473 -12.811 47.769
{ca pro b 183}-8.115 -14.119 46.366
{ca leu b 184}-7.935 -14.938 42.724
{ca thr b 185}-6.873 -18.492 41.907
{ca val b 186}-6.004 -20.314 38.720
{ca glu b 187}-5.295 -24.086 38.677
{ca trp b 188}-3.168 -26.103 36.324
{ca arg b 189}-3.637 -29.838 36.008
{ca ala b 190}-0.543 -31.873 35.066
@vectorlist {SS} color= yellow master= {SS}
{ca cys b 15}P 5.389 15.491 48.329
{cb cys b 15}4.042 16.084 47.851
{sg cys b 15}4.012 17.903 47.514
{sg cys b 79}3.930 18.850 49.374
{cb cys b 79}2.209 18.598 49.982
{ca cys b 79}1.118 19.009 48.974
{ca cys b 117}P 1.777 -17.510 36.905
{cb cys b 117}1.622 -17.487 38.393
{sg cys b 117}0.015 -16.735 38.764
{sg cys b 173}-0.360 -17.378 40.645
{cb cys b 173}-1.212 -19.008 40.394
{ca cys b 173}-1.543 -19.703 41.718
@vectorlist {sc} color= green master= {side ch} off
{ca asp b 57}P 21.932 29.163 46.521
{cb asp b 57}21.449 28.039 45.622
{cg asp b 57}21.995 28.143 44.22
{od1 asp b 57}22.071 29.253 43.68
{cg asp b 57}P 21.995 28.143 44.22
{od2 asp b 57}22.327 27.108 43.629
{ca trp b 61}P 17.662 31.537 49.377
{cb trp b 61}17.177 30.280 48.679
{cg trp b 61}17.449 30.326 47.222
{cd1 trp b 61}17.718 31.430 46.475
{ne1 trp b 61}17.951 31.076 45.171
{ce2 trp b 61}17.837 29.712 45.059
{ne1 trp b 61}17.951 31.076 45.171
{cg trp b 61}P 17.449 30.326 47.222
{cd2 trp b 61}17.518 29.213 46.339
{ce2 trp b 61}17.837 29.712 45.059
{cz2 trp b 61}17.992 28.884 43.949
{ch2 trp b 61}17.827 27.543 44.149
{cd2 trp b 61}P 17.518 29.213 46.339
{ce3 trp b 61}17.355 27.835 46.505
{cz3 trp b 61}17.510 27.017 45.420
{ch2 trp b 61}17.827 27.543 44.149
{ca arg b 71}P 7.965 26.764 51.213
{cb arg b 71}9.479 26.547 51.078
{cg arg b 71}10.043 26.865 49.72
{cd arg b 71}9.303 26.116 48.616
{ne arg b 71}10.047 26.192 47.362
{cz arg b 71}9.618 26.810 46.267
{nh1 arg b 71}8.469 27.441 46.255
{cz arg b 71}P 9.618 26.810 46.267
{nh2 arg b 71}10.412 26.899 45.201
{ca his b 81}P -4.135 20.310 48.213
{cb his b 81}-3.816 21.743 47.76
{cg his b 81}-4.693 22.229 46.649
{nd1 his b 81}-5.949 22.749 46.862
{ce1 his b 81}-6.500 23.049 45.697
{ne2 his b 81}-5.648 22.740 44.739
{ce1 his b 81}-6.500 23.049 45.697
{cg his b 81}P -4.693 22.229 46.649
{cd2 his b 81}-4.509 22.232 45.306
{ne2 his b 81}-5.648 22.740 44.739
{ce1 his b 81}-6.500 23.049 45.697
{ca asn b 82}P -2.933 18.264 45.211
{cb asn b 82}-1.528 18.407 44.646
{cg asn b 82}-1.379 19.614 43.743
{od1 asn b 82}-2.342 20.292 43.412
{cg asn b 82}P -1.379 19.614 43.74
{nd2 asn b 82}-0.169 19.873 43.33

@kinemage 5
@caption  (B&T Fig. 15.22-23)
Complex of T-cell receptor (pink & blue) with MHC class I antigen (white and yellow), with bound peptide (gold). (from PDB file 1AO7) 
@onewidth
@viewid {Fig. 15.22}
@zoom 1.59
@zslab 160
@center 107.508 20.655 -22.561
@matrix
-0.686414 -.726574 -.030448 .211372 -.239401 .947633 -.695816 .644032 .317905
@2viewid {Fig. 15.23}
@2zoom .9
@2zslab 160
@2center 81.172 14.238 0.931
@2matrix
-0.740784 .633562 .223245 .028006 .361177 -.932077 -.671159 -.684216 -.285297
@3viewid {side}
@3zoom 0.9
@3zslab 160
@3center 82.1 7.876 -2.471
@3matrix
0.50048 .63902 .5841 -.86544 .38717 .31798 -.02295 -.66465 .7468
@group {MHC alpha} dominant
@vectorlist {Calphas} color= white
{ca gly a 1}P 85.17 -3.333 24.892
{ca ser a 2}84.397 -3.509 21.179
{ca his a 3}82.826 -.65 19.176
{ca ser a 4}81.40 -.085 15.698
{ca met a 5}80.343 2.594 13.257
{ca arg a 6}77.394 2.114 10.907
{ca tyr a 7}75.473 4.092 8.322
{ca phe a 8}71.943 3.129 7.257
{ca phe a 9}70.306 4.451 4.059
{ca thr a 10}66.64 4.058 2.941
{ca ser a 11}65.156 4.79 -0.526
{ca val a 12}61.414 4.581 -1.315
{ca ser a 13}59.708 5.219 -4.649
{ca arg a 14}56.70 7.513 -4.759
{ca pro a 15}54.636 6.391 -7.796
{ca gly a 16}52.729 9.347 -9.19
{ca arg a 17}54.296 11.589 -6.557
{ca gly a 18}57.61 13.08 -7.6
{ca glu a 19}61.062 12.239 -6.298
{ca pro a 20}61.69 9.255 -3.987
{ca arg a 21}62.273 9.562 -.248
{ca phe a 22}65.826 9.387 1.02
{ca ile a 23}66.904 8.947 4.664
{ca ala a 24}70.492 8.447 5.865
{ca val a 25}71.399 7.876 9.516
{ca gly a 26}74.792 7.376 11.177
{ca tyr a 27}75.495 5.614 14.532
{ca val a 28}78.544 4.909 16.748
{ca asp a 29}77.325 2.126 19.082
{ca asp a 30}73.638 2.552 19.789
{ca thr a 31}74.071 6.30 19.61
{ca gln a 32}73.119 8.151 16.435
{ca phe a 33}75.23 11.225 15.547
{ca val a 34}74.162 12.476 12.078
{ca arg a 35}71.11 12.383 9.804
{ca phe a 36}69.925 13.403 6.353
{ca asp a 37}66.286 13.491 5.347
{ca ser a 38}64.967 14.60 1.975
{ca asp a 39}61.756 15.914 3.57
{ca ala a 40}63.678 18.08 6.044
{ca ala a 41}64.287 21.821 5.561
{ca ser a 42}68.072 22.399 5.673
{ca gln a 43}68.742 19.846 2.953
{ca arg a 44}72.173 19.161 4.505
{ca met a 45}73.691 16.45 6.667
{ca glu a 46}72.883 17.353 10.32
{ca pro a 47}74.239 16.53 13.843
{ca arg a 48}72.296 14.401 16.381
{ca ala a 49}74.881 14.135 19.125
{ca pro a 50}76.56 16.988 21.021
{ca trp a 51}80.095 15.739 20.343
{ca ile a 52}79.741 15.917 16.578
{ca glu a 53}78.879 19.629 16.582
{ca gln a 54}82.395 21.024 17.064
{ca glu a 55}83.487 19.495 13.729
{ca gly a 56}83.726 22.476 11.371
{ca pro a 57}82.638 23.897 7.958
{ca glu a 58}84.896 21.519 6.024
{ca tyr a 59}83.233 18.497 7.72
{ca trp a 60}79.63 19.445 7.098
{ca asp a 61}80.25 20.656 3.568
{ca gly a 62}81.917 17.368 2.649
{ca glu a 63}79.396 15.136 4.413
{ca thr a 64}76.535 16.997 2.757
{ca arg a 65}78.087 16.595 -0.675
{ca lys a 66}78.689 12.887 -0.104
{ca val a 67}75.173 12.30 1.099
{ca lys a 68}73.786 13.876 -2.059
{ca ala a 69}75.96 11.572 -4.158
{ca his a 70}74.426 8.559 -2.345
{ca ser a 71}70.908 9.931 -2.887
{ca gln a 72}71.584 10.376 -6.582
{ca thr a 73}72.969 6.87 -6.975
{ca his a 74}69.966 5.479 -5.079
{ca arg a 75}67.426 7.554 -6.99
{ca val a 76}68.825 6.13 -10.223
{ca asp a 77}68.913 2.60 -8.803
{ca leu a 78}65.19 2.604 -8.069
{ca gly a 79}64.613 3.012 -11.793
{ca thr a 80}67.294 .482 -12.750
{ca leu a 81}65.962 -2.239 -10.486
{ca arg a 82}62.393 -1.824 -11.668
{ca gly a 83}63.914 -2.359 -15.09
{ca tyr a 84}65.714 -5.593 -14.168
{ca tyr a 85}62.529 -7.041 -12.685
{ca asn a 86}60.239 -5.369 -15.234
{ca gln a 87}57.886 -4.078 -12.532
{ca ser a 88}55.096 -1.567 -13.173
{ca glu a 89}55.453 2.159 -12.545
{ca ala a 90}52.367 1.807 -10.34
{ca gly a 91}53.98 .365 -7.215
{ca ser a 92}56.189 1.657 -4.432
{ca his a 93}59.564 .024 -3.862
{ca thr a 94}62.249 .128 -1.208
{ca val a 95}66.039 .008 -1.327
{ca gln a 96}68.202 .045 1.81
{ca arg a 97}71.994 -.045 2.199
{ca met a 98}74.307 -.428 5.174
{ca tyr a 99}78.046 -.322 5.798
{ca gly a 100}80.381 .158 8.723
{ca cys a 101}83.248 -1.334 10.709
{ca asp a 102}83.901 -3.041 14.073
{ca val a 103}87.065 -2.524 16.164
{ca gly a 104}88.24 -4.769 18.983
{ca ser a 105}89.219 -3.928 22.555
{ca asp a 106}92.43 -2.325 21.298
{ca trp a 107}90.443 -.266 18.765
{ca arg a 108}92.169 -2.087 15.905
{ca phe a 109}90.127 -3.151 12.847
{ca leu a 110}88.081 -6.327 13.284
{ca arg a 111}85.266 -6.65 10.753
{ca gly a 112}84.01 -4.638 7.754
{ca tyr a 113}80.485 -4.55 6.227
{ca his a 114}78.529 -3.463 3.114
{ca gln a 115}75.04 -4.891 2.461
{ca tyr a 116}72.342 -3.876 0.01
{ca ala a 117}68.645 -4.831 -0.071
{ca tyr a 118}65.658 -4.382 -2.365
{ca asp a 119}62.043 -4.897 -1.264
{ca gly a 120}63.052 -6.156 2.142
{ca lys a 121}65.581 -8.803 1.203
{ca asp a 122}69.246 -9.153 0.344
{ca tyr a 123}70.173 -8.196 -3.212
{ca ile a 124}73.997 -8.139 -3.057
{ca ala a 125}76.549 -8.188 -0.222
{ca leu a 126}80.311 -7.802 0.009
{ca lys a 127}82.003 -10.895 1.499
{ca glu a 128}84.061 -10.849 4.755
{ca asp a 129}87.306 -10.906 2.759
{ca leu a 130}86.277 -7.512 1.32
{ca arg a 131}87.295 -8.709 -2.11
{ca ser a 132}84.25 -10.717 -3.159
{ca trp a 133}80.502 -10.187 -3.786
{ca thr a 134}77.538 -12.477 -3.084
{ca ala a 135}74.601 -12.10 -5.481
{ca ala a 136}71.031 -13.002 -4.444
{ca asp a 137}69.579 -13.757 -7.855
{ca met a 138}70.172 -13.583 -11.61
{ca ala a 139}69.40 -9.842 -11.669
{ca ala a 140}71.831 -9.20 -8.818
{ca gln a 141}74.484 -10.952 -10.941
{ca thr a 142}74.279 -8.087 -13.415
{ca thr a 143}75.187 -5.688 -10.617
{ca lys a 144}77.976 -8.008 -9.446
{ca his a 145}79.762 -8.054 -12.825
{ca lys a 146}79.191 -4.319 -13.222
{ca trp a 147}80.789 -3.713 -9.798
{ca glu a 148}83.644 -6.125 -10.402
{ca ala a 149}84.476 -4.217 -13.581
{ca ala a 150}84.112 -.892 -11.739
{ca his a 151}86.564 -1.886 -9.018
{ca val a 152}84.15 -1.126 -6.111
{ca ala a 153}85.242 -3.757 -3.569
{ca glu a 154}88.781 -2.40 -3.922
{ca gln a 155}87.439 .989 -2.82
{ca leu a 156}85.332 -.298 0.085
{ca arg a 157}88.159 -2.402 1.532
{ca ala a 158}90.363 .693 1.681
{ca tyr a 159}87.631 2.617 3.481
{ca leu a 160}86.287 -.075 5.895
{ca glu a 161}89.78 -1.115 7.04
{ca gly a 162}91.183 2.391 7.352
{ca thr a 163}89.235 5.647 7.207
{ca cys a 164}86.261 3.991 8.931
{ca val a 165}88.313 2.823 11.933
{ca glu a 166}90.356 6.032 11.972
{ca trp a 167}87.253 8.197 12.215
{ca leu a 168}85.473 5.872 14.621
{ca arg a 169}88.401 6.219 17.032
{ca arg a 170}88.157 9.974 16.542
{ca tyr a 171}84.488 9.917 17.56
{ca leu a 172}85.138 7.539 20.456
{ca glu a 173}87.608 10.041 21.927
{ca asn a 174}85.436 13.076 21.213
{ca gly a 175}82.419 11.373 22.712
{ca lys a 176}84.528 9.954 25.548
{ca glu a 177}81.905 10.814 28.181
{ca thr a 178}78.898 9.654 26.145
{ca leu a 179}80.151 6.672 24.145
{ca gln a 180}82.826 4.933 26.215
{ca arg a 181}80.332 5.016 29.083
{ca thr a 182}78.731 1.824 30.356
{ca asp a 183}75.582 1.638 32.478
{ca ala a 184}74.568 -1.349 34.589
{ca pro a 185}70.844 -2.286 34.505
{ca lys a 186}68.599 -1.394 37.445
{ca thr a 187}67.089 -4.856 37.838
{ca his a 188}64.073 -5.953 39.88
{ca met a 189}61.118 -8.318 39.589
{ca thr a 190}57.336 -8.14 39.774
{ca his a 191}54.591 -10.674 40.369
{ca his a 192}51.164 -10.729 38.87
{ca ala a 193}48.684 -13.123 40.316
{ca val a 194}46.114 -14.124 37.738
{ca ser a 195}44.437 -16.458 40.191
{ca asp a 196}45.073 -18.866 43.056
{ca his a 197}46.814 -21.264 40.667
{ca glu a 198}48.413 -19.068 37.988
{ca ala a 199}51.275 -16.645 38.623
{ca thr a 200}53.462 -14.48 36.395
{ca leu a 201}56.988 -13.36 37.277
{ca arg a 202}58.558 -10.53 35.289
{ca cys a 203}62.291 -9.846 35.2
{ca trp a 204}63.059 -6.141 34.623
{ca ala a 205}66.222 -4.565 33.229
{ca leu a 206}66.071 -.762 33.018
{ca ser a 207}68.422 2.192 32.4
{ca phe a 208}71.202 0.176 30.766
{ca tyr a 209}73.66 1.155 28.024
{ca pro a 210}74.627 -.157 25.582
{ca ala a 211}71.567 -2.177 24.572
{ca glu a 212}73.558 -5.428 24.409
{ca ile a 213}71.904 -7.652 27.012
{ca thr a 214}70.659 -11.217 27.499
{ca leu a 215}67.897 -12.126 29.966
{ca thr a 216}67.457 -15.768 30.993
{ca trp a 217}64.813 -17.504 33.136
{ca gln a 218}66.205 -20.627 34.816
{ca arg a 219}65.006 -22.808 37.696
{ca asp a 220}68.344 -23.882 39.189
{ca gly a 221}69.323 -25.297 35.812
{ca glu a 222}65.926 -25.598 34.14
{ca asp a 223}65.811 -24.185 30.61
{ca gln a 224}62.658 -22.121 31.173
{ca thr a 225}63.589 -19.326 28.732
{ca gln a 226}62.396 -21.744 26.027
{ca asp a 227}58.889 -20.883 27.263
{ca thr a 228}59.531 -17.314 28.435
{ca glu a 229}58.061 -14.179 26.872
{ca leu a 230}60.743 -11.589 26.044
{ca val a 231}60.083 -8.161 24.551
{ca glu a 232}62.367 -6.415 22.028
{ca thr a 233}64.833 -4.22 23.933
{ca arg a 234}63.245 -.799 23.77
{ca pro a 235}64.562 2.766 23.977
{ca ala a 236}63.678 4.857 27.039
{ca gly a 237}64.357 8.116 25.229
{ca asp a 238}67.336 9.431 27.194
{ca gly a 239}70.068 7.289 25.682
{ca thr a 240}69.309 4.209 27.775
{ca phe a 241}67.365 .993 27.11
{ca gln a 242}64.786 -1.279 28.809
{ca lys a 243}63.767 -4.925 28.473
{ca trp a 244}61.873 -7.638 30.375
{ca ala a 245}61.055 -11.364 30.357
{ca ala a 246}58.186 -13.292 31.994
{ca val a 247}56.991 -16.875 32.569
{ca val a 248}53.733 -18.432 33.727
{ca val a 249}54.774 -20.263 36.874
{ca pro a 250}52.092 -22.313 38.661
{ca ser a 251}51.872 -21.119 42.278
{ca gly a 252}54.466 -22.778 44.483
{ca gln a 253}57.382 -23.367 42.115
{ca glu a 254}57.917 -19.613 41.715
{ca gln a 255}60.464 -19.376 44.546
{ca arg a 256}62.733 -21.935 42.845
{ca tyr a 257}62.837 -19.861 39.656
{ca thr a 258}65.645 -17.326 39.343
{ca cys a 259}66.375 -14.771 36.611
{ca his a 260}69.769 -14.236 34.983
{ca val a 261}70.886 -10.788 33.844
{ca gln a 262}73.808 -10.382 31.443
{ca his a 263}75.26 -6.921 30.718
{ca glu a 264}78.734 -5.374 30.300
{ca gly a 265}78.129 -3.055 33.244
{ca leu a 266}77.884 -6.006 35.638
{ca pro a 267}80.991 -7.866 36.914
{ca lys a 268}79.176 -11.121 37.721
{ca pro a 269}75.911 -12.211 36.007
{ca leu a 270}73.094 -11.267 38.387
{ca thr a 271}70.736 -13.929 39.65
{ca leu a 272}67.566 -12.608 41.246
{ca arg a 273}65.633 -14.979 43.508
{ca trp a 274}61.914 -14.734 44.276
@subgroup {side ch}
@vectorlist {SS} color= yellow
{ca cys a 101}P 83.248 -1.334 10.709
{cb cys a 101}84.527 -0.608 10.282
{sg cys a 101}84.662 1.126 10.849
{sg cys a 164}84.026 2.252 9.283
{cb cys a 164}85.569 2.722 8.419
{ca cys a 164}86.261 3.991 8.931
{ca cys a 203}P 62.291 -9.846 35.2
{cb cys a 203}63.288 -10.813 34.553
{sg cys a 203}64.992 -10.76 35.204
{sg cys a 259}65.702 -12.635 34.868
{cb cys a 259}65.57 -13.47 36.488
{ca cys a 259}66.375 -14.771 36.611
@group {MHC beta} dominant
@subgroup {main ch}
@vectorlist {Calphas} color= yellowtint
{ca met b 0}P 58.193 -8.569 -1.802
{"}58.193 -8.569 -1.802
{ca ile b 1}58.516 -8.693 1.99
{ca gln b 2}55.693 -7.598 4.339
{ca arg b 3}56.092 -7.457 8.099
{ca thr b 4}53.654 -6.447 10.804
{ca pro b 5}54.847 -3.931 13.432
{ca lys b 6}55.291 -4.914 17.085
{ca ile b 7}54.02 -2.086 19.286
{ca gln b 8}55.106 -1.136 22.845
{ca val b 9}53.592 1.758 24.823
{ca tyr b 10}55.518 2.581 27.99
{ca ser b 11}56.948 5.607 29.829
{ca arg b 12}60.59 6.628 30.298
{ca his b 13}60.478 6.49 34.096
{ca pro b 14}58.399 4.543 36.661
{ca ala b 15}54.988 6.239 36.615
{ca glu b 16}54.047 8.33 39.645
{ca asn b 17}50.848 10.347 39.343
{ca gly b 18}51.427 14.077 39.33
{ca lys b 19}55.083 13.785 38.255
{ca ser b 20}56.43 14.70 34.792
{ca asn b 21}57.407 11.746 32.57
{ca phe b 22}57.623 10.761 28.884
{ca leu b 23}55.213 8.428 27.123
{ca asn b 24}56.711 6.197 24.441
{ca cys b 25}55.302 4.149 21.568
{ca tyr b 26}58.038 2.062 20.043
{ca val b 27}57.049 .49 16.736
{ca ser b 28}59.481 -2.046 15.323
{ca gly b 29}59.964 -4.83 12.812
{ca phe b 30}57.754 -3.462 10.044
{ca his b 31}58.073 -3.392 6.276
{ca pro b 32}57.225 -1.462 4.118
{ca ser b 33}58.402 1.806 5.787
{ca asp b 34}55.215 3.873 5.504
{ca ile b 35}53.448 3.784 8.871
{ca glu b 36}51.118 6.165 10.747
{ca val b 37}51.61 6.53 14.523
{ca asp b 38}49.665 8.696 16.997
{ca leu b 39}49.795 8.943 20.805
{ca leu b 40}46.321 9.276 22.358
{ca lys b 41}44.945 10.765 25.593
{ca asn b 42}41.368 9.903 26.515
{ca gly b 43}40.883 8.935 22.863
{ca glu b 44}42.058 12.218 21.31
{ca arg b 45}45.188 12.995 19.26
{ca ile b 46}48.20 14.358 21.105
{ca glu b 47}49.855 17.038 18.957
{ca lys b 48}53.299 17.704 20.481
{ca val b 49}54.778 14.288 19.746
{ca glu b 50}58.354 13.737 18.553
{ca his b 51}59.449 10.895 16.251
{ca ser b 52}62.898 9.546 15.391
{ca asp b 53}64.997 9.151 12.28
{ca leu b 54}63.792 6.064 10.401
{ca ser b 55}66.27 3.248 10.764
{ca phe b 56}66.298 -.542 10.542
{ca ser b 57}67.643 -3.807 11.905
{ca lys b 58}69.918 -6.655 10.743
{ca asp b 59}66.88 -8.226 9.039
{ca trp b 60}66.084 -4.984 7.171
{ca ser b 61}62.922 -4.365 9.214
{ca phe b 62}62.342 -.78 10.292
{ca tyr b 63}62.042 .722 13.791
{ca leu b 64}60.751 4.127 14.988
{ca leu b 65}60.142 5.914 18.367
{ca tyr b 66}57.441 8.436 19.201
{ca cys b 67}57.117 10.24 22.535
{ca thr b 68}55.368 13.042 24.42
{ca glu b 69}56.198 14.562 27.806
{ca phe b 70}53.308 13.962 30.24
{ca thr b 71}52.085 13.962 33.846
{ca pro b 72}50.137 10.723 34.543
{ca thr b 73}47.00 10.629 36.733
{ca glu b 74}44.665 7.937 38.121
{ca lys b 75}41.88 8.741 35.66
{ca asp b 76}43.733 9.657 32.434
{ca glu b 77}43.897 7.046 29.655
{ca tyr b 78}46.788 6.914 27.154
{ca ala b 79}47.328 4.732 24.082
{ca cys b 80}49.084 4.501 20.722
{ca arg b 81}47.422 4.179 17.317
{ca val b 82}49.36 2.594 14.440
{ca asn b 83}48.411 2.146 10.784
{ca his b 84}50.352 -.019 8.304
{ca val b 85}49.303 -2.052 5.209
{ca thr b 86}49.619 -5.244 7.229
{ca leu b 87}46.886 -4.011 9.541
{ca ser b 88}43.368 -4.537 8.223
{ca gln b 89}42.365 -1.694 10.573
{ca pro b 90}44.344 .735 12.807
{ca cys b 91}45.793 -1.057 15.81
{ca ile b 92}45.392 .65 19.189
{ca val b 93}47.546 -.367 22.173
{ca lys b 94}46.617 1.016 25.608
{ca trp b 95}49.215 2.144 28.122
{ca asp b 96}49.454 -.137 31.146
{ca arg b 97}51.503 1.347 33.974
{ca asp b 98}53.078 -2.023 34.992
{ca met b 99}54.778 -2.203 31.667
@subgroup {side ch}
@vectorlist {SS} color= yellow
{ca cys b 25}P 55.302 4.149 21.568
{cb cys b 25}54.122 4.723 20.788
{sg cys b 25}53.293 3.456 19.757
{sg cys b 80}51.499 4.28 19.288
{cb cys b 80}50.43 3.781 20.678
{ca cys b 80}49.084 4.501 20.722
@group {peptide} dominant
@subgroup {mainchain}
@vectorlist {Calphas} color= gold
{ca leu c 1}P 82.688 9.995 7.956
{ca leu c 2}80.861 8.761 4.862
{ca phe c 3}82.217 6.503 2.104
{ca gly c 4}83.298 8.46 -0.979
{ca tyr c 5}82.724 6.17 -3.95
{ca pro c 6}79.116 4.866 -4.356
{ca val c 7}78.315 3.283 -7.746
{ca tyr c 8}74.991 2.665 -9.526
{ca val c 9}73.644 -.947 -9.486
@group {T-cell rec Va} dominant
@subgroup {mainchain}
@vectorlist {Calphas} color= pinktint
{ca lys d 1}P 91.396 22.683 1.459
{"}91.396 22.683 1.459
{ca glu d 2}94.91 23.319 .154
{ca val d 3}98.008 21.269 -.714
{ca glu d 4}101.523 22.53 .061
{ca gln d 5}104.425 21.133 -1.993
{ca asn d 6}108.135 20.559 -1.405
{ca ser d 7}110.039 23.515 -2.847
{ca gly d 8}111.684 24.963 -5.949
{ca pro d 9}113.997 23.00 -8.284
{ca leu d 10}115.46 19.837 -6.8
{ca ser d 11}118.619 18.823 -8.607
{ca val d 12}119.986 15.302 -8.273
{ca pro d 13}122.674 13.399 -10.21
{ca glu d 14}121.798 10.459 -12.442
{ca gly d 15}121.507 7.364 -10.244
{ca ala d 16}120.623 9.143 -6.982
{ca ile d 17}117.356 9.318 -5.014
{ca ala d 18}114.839 12.105 -5.658
{ca ser d 19}112.382 12.421 -2.782
{ca leu d 20}109.341 14.658 -2.841
{ca asn d 21}107.034 15.71 0.03
{ca cys d 22}103.397 16.82 0.06
{ca thr d 23}101.04 18.138 2.705
{ca tyr d 24}97.271 18.729 2.695
{ca ser d 25}94.697 20.432 4.92
{ca asp d 26}91.324 18.611 4.616
{ca arg d 27}91.454 15.819 7.211
{ca gly d 28}88.632 13.998 5.405
{ca ser d 29}90.635 13.439 2.225
{ca gln d 30}90.289 9.888 0.94
{ca ser d 31}92.233 9.732 -2.356
{ca phe d 32}95.831 10.818 -3.041
{ca phe d 33}97.777 11.053 -6.325
{ca trp d 34}101.04 12.021 -7.991
{ca tyr d 35}101.276 13.387 -11.518
{ca arg d 36}104.309 13.906 -13.714
{ca gln d 37}104.274 16.79 -16.139
{ca tyr d 38}106.896 17.093 -18.86
{ca ser d 39}107.508 20.655 -20.091
{ca gly d 40}104.998 21.575 -22.786
{ca lys d 41}102.935 18.463 -22.051
{ca ser d 42}99.845 17.448 -20.032
{ca pro d 43}99.924 16.075 -16.456
{ca glu d 44}100.275 12.295 -16.533
{ca leu d 45}99.221 10.132 -13.598
{ca ile d 46}101.976 7.994 -12.082
{ca met d 47}100.746 7.086 -8.552
{ca ser d 48}97.535 6.597 -6.512
{ca ile d 49}97.347 5.754 -2.782
{ca tyr d 50}94.032 4.95 -1.044
{ca ser d 51}95.307 3.568 2.276
{ca asn d 52}97.924 5.129 4.449
{ca gly d 53}101.081 3.10 4.101
{ca asp d 54}103.949 2.478 1.67
{ca lys d 55}102.999 1.619 -1.939
{ca glu d 56}106.195 0.681 -3.77
{ca asp d 57}105.203 -0.369 -7.258
{ca gly d 58}107.702 0.282 -10.007
{ca arg d 61}110.792 2.429 -9.425
{ca phe d 62}108.561 4.817 -7.492
{ca thr d 63}107.712 4.525 -3.822
{ca ala d 64}104.757 6.356 -2.298
{ca gln d 65}104.042 6.87 1.418
{ca leu d 66}100.894 8.226 3.05
{ca asn d 67}100.668 9.409 6.652
{ca lys d 68}97.063 10.392 7.239
{ca ala d 69}97.658 11.304 10.899
{ca ser d 70}100.301 13.804 9.81
{ca gln d 71}98.481 14.57 6.539
{ca tyr d 72}101.648 13.973 4.547
{ca val d 73}102.359 12.32 1.16
{ca ser d 74}105.658 11.172 -0.413
{ca leu d 75}107.303 9.994 -3.624
{ca leu d 76}110.839 8.596 -3.751
{ca ile d 77}112.25 8.055 -7.249
{ca arg d 78}114.933 5.357 -6.929
{ca asp d 79}117.684 4.868 -9.588
{ca ser d 80}117.198 8.313 -11.154
{ca gln d 81}117.343 8.568 -14.959
{ca pro d 82}117.658 11.967 -16.683
{ca ser d 83}114.306 11.254 -18.391
{ca asp d 84}112.792 11.74 -14.938
{ca ser d 85}113.308 15.484 -15.272
{ca ala d 86}109.751 16.796 -15.062
{ca thr d 87}107.671 18.729 -12.55
{ca tyr d 88}105.675 16.554 -10.172
{ca leu d 89}102.157 17.498 -9.
{ca cys d 90}100.481 16.259 -5.808
{ca ala d 91}96.681 15.92 -5.843
{ca val d 92}94.181 14.964 -3.136
{ca thr d 93}90.382 14.43 -3.005
{ca thr d 98}87.561 13.48 -0.624
{ca asp d 99}84.91 11.797 -2.768
{ca ser d 100}83.889 11.013 -6.365
{ca trp d 101}82.184 14.406 -6.671
{ca gly d 102}84.874 16.19 -4.712
{ca lys d 103}87.22 18.682 -6.374
{ca leu d 104}90.722 17.481 -7.197
{ca gln d 105}93.371 19.674 -5.626
{ca phe d 106}96.926 19.943 -6.724
{ca gly d 107}100.072 21.389 -5.259
{ca ala d 108}102.013 24.187 -6.938
{ca gly d 109}104.293 21.441 -8.253
{ca thr d 110}107.923 20.607 -7.483
{ca gln d 111}110.545 20.604 -10.217
{ca val d 112}113.064 17.755 -10.498
{ca val d 113}116.174 17.881 -12.667
{ca val d 114}118.267 14.698 -12.956
{ca thr d 115}121.713 15.739 -14.139
{ca pro d 116}123.757 13.18 -16.14
{ca asp d 117}127.136 11.717 -15.216
{ca ile d 118}129.897 13.234 -17.336
{ca gln d 119}133.164 11.556 -16.55
{ca asn d 120}135.543 14.363 -17.621
{ca pro d 121}135.632 17.922 -18.729
@subgroup {side ch}
@vectorlist {SS} color= yellow
{ca cys d 22}P 103.397 16.82 0.06
{cb cys d 22}102.625 16.067 -1.012
{sg cys d 22}101.02 16.797 -1.433
{sg cys d 90}100.418 15.687 -3.018
{cb cys d 90}101.088 16.59 -4.447
{ca cys d 90}100.481 16.259 -5.808
@group {T-cell rec b} dominant
@vectorlist {Vb} color= pink
{ca gly e 3}P 91.185 8.466 -23.342
{"}91.185 8.466 -23.342
{ca val e 4}90.544 12.225 -23.395
{ca thr e 5}90.975 14.002 -26.723
{ca gln e 6}90.675 17.746 -27.302
{ca thr e 7}90.946 20.064 -30.303
{ca pro e 8}92.43 22.356 -31.591
{ca lys e 9}96.068 22.151 -30.504
{ca phe e 10}96.956 25.797 -31.09
{ca gln e 11}94.887 28.91 -31.697
{ca val e 12}95.461 32.618 -32.322
{ca leu e 13}92.557 35.041 -31.918
{ca lys e 14}92.132 38.774 -31.515
{ca thr e 15}90.039 40.421 -28.799
{ca gly e 16}86.374 39.905 -29.665
{ca gln e 17}86.613 36.612 -31.529
{ca ser e 18}84.657 33.716 -30.05
{ca met e 19}86.05 30.182 -30.021
{ca thr e 20}85.044 26.79 -28.634
{ca leu e 21}87.493 24.288 -27.227
{ca gln e 22}86.14 20.825 -27.942
{ca cys e 23}86.778 17.936 -25.581
{ca ala e 24}85.729 14.298 -25.606
{ca gln e 25}86.087 11.157 -23.543
{ca asp e 26}85.125 7.556 -24.436
{ca met e 27}85.645 6.059 -20.982
{ca asn e 28}81.993 6.382 -19.944
{ca his e 29}82.848 8.974 -17.344
{ca glu e 30}80.238 11.249 -15.873
{ca tyr e 31}82.507 13.911 -14.374
{ca met e 32}84.465 16.223 -16.71
{ca ser e 33}86.305 19.481 -15.947
{ca trp e 34}88.278 22.348 -17.532
{ca tyr e 35}91.518 23.886 -16.237
{ca arg e 36}93.931 26.549 -17.468
{ca gln e 37}97.608 26.477 -16.491
{ca asp e 38}99.561 29.719 -15.958
{ca pro e 39}103.23 29.98 -14.774
{ca gly e 40}102.389 31.784 -11.534
{ca met e 41}99.322 29.86 -10.353
{ca gly e 42}99.604 26.377 -11.792
{ca leu e 43}96.288 24.712 -12.698
{ca arg e 44}93.013 26.547 -11.966
{ca leu e 45}89.529 25.09 -12.433
{ca ile e 46}87.275 27.133 -14.733
{ca his e 47}84.073 25.036 -14.933
{ca tyr e 48}83.082 21.411 -14.28
{ca ser e 49}80.175 19.005 -14.679
{ca val e 50}79.323 15.892 -12.682
{ca gly e 51}76.67 14.666 -15.110
{ca ala e 52}74.783 15.482 -18.302
{ca gly e 53}72.902 18.742 -17.988
{ca ile e 54}74.559 19.522 -14.663
{ca thr e 55}77.13 22.325 -14.905
{ca asp e 56}78.924 24.476 -12.273
{ca gln e 57}81.535 27.262 -12.181
{ca gly e 58}84.992 26.65 -10.767
{ca glu e 59}87.723 28.96 -9.545
{ca val e 60}87.972 31.32 -12.514
{ca pro e 61}84.728 30.969 -14.553
{ca asn e 62}84.72 34.61 -15.784
{ca gly e 63}84.72 34.894 -19.57
{ca tyr e 65}83.948 31.24 -20.212
{ca asn e 66}80.772 29.465 -21.207
{ca val e 67}80.158 25.695 -20.982
{ca ser e 68}77.576 22.992 -21.893
{ca arg e 69}76.963 19.25 -21.511
{ca ser e 70}74.052 17.785 -23.494
{ca thr e 71}75.823 14.437 -23.766
{ca thr e 72}78.098 12.687 -21.317
{ca glu e 73}80.836 12.176 -23.925
{ca asp e 74}81.699 15.834 -24.758
{ca phe e 75}82.167 18.94 -22.637
{ca pro e 76}82.863 22.052 -24.77
{ca leu e 77}84.316 25.244 -23.321
{ca arg e 78}83.077 28.338 -25.165
{ca leu e 79}84.64 31.816 -25.097
{ca leu e 80}82.147 34.283 -26.623
{ca ser e 81}84.391 37.365 -26.938
{ca ala e 82}88.129 36.705 -26.648
{ca ala e 83}90.306 38.674 -24.266
{ca pro e 84}94.109 39.005 -24.006
{ca ser e 85}93.966 37.706 -20.424
{ca gln e 86}92.504 34.42 -21.73
{ca thr e 87}95.923 33.534 -23.154
{ca ser e 88}96.909 30.265 -21.437
{ca val e 89}97.098 26.465 -21.821
{ca tyr e 90}93.783 24.644 -21.537
{ca phe e 91}93.623 21.097 -20.191
{ca cys e 92}90.44 19.087 -20.231
{ca ala e 93}90.078 16.213 -17.766
{ca ser e 94}87.634 13.539 -16.574
{ca arg e 95}86.797 11.257 -13.61
{ca pro e 96}84.19 8.419 -13.512
{ca gly e 97}81.732 9.987 -11.061
{ca leu e 98}78.896 7.681 -9.941
{ca ala e 99}79.762 5.306 -12.808
{ca gly e 100}82.944 3.886 -11.332
{ca gly e 101}85.046 3.216 -8.274
{ca arg e 102}88.358 4.382 -9.751
{ca pro e 103}89.209 7.88 -8.295
{ca glu e 105}91.813 8.778 -11.002
{ca gln e 106}91.277 11.848 -13.081
{ca tyr e 107}92.678 11.855 -16.578
{ca phe e 108}93.902 14.893 -18.455
{ca gly e 109}93.579 15.616 -22.179
{ca pro e 110}96.478 16.578 -24.521
{ca gly e 111}95.979 20.347 -24.142
{ca thr e 112}95.272 23.396 -26.332
{ca arg e 113}97.491 26.462 -26.597
{ca leu e 114}95.697 29.762 -27.118
{ca thr e 115}96.904 33.351 -27.597
{ca val e 116}94.873 36.596 -27.969
{ca thr e 116a}95.893 40.058 -29.231
{ca glu e 117}93.985 43.393 -29.15
{ca asp e 118}94.906 45.271 -32.37
@vectorlist {Cb} color= sky
{ca asp e 118}P 94.906 45.271 -32.37
{ca leu e 119}96.327 42.443 -34.52
{ca lys e 120}99.404 43.276 -36.604
{ca asn e 121}101.396 40.362 -35.234
{ca val e 122}101.583 36.662 -36.102
{ca phe e 123}104.902 36.482 -37.89
{ca pro e 124}105.99 33.038 -39.007
{ca pro e 125}109.573 32.151 -38.093
{ca glu e 126}112.787 32.273 -40.11
{ca val e 127}114.674 28.97 -39.897
{ca ala e 128}118.462 28.686 -40.32
{ca val e 129}120.769 25.668 -39.87
{ca phe e 130}124.31 26.073 -38.525
{ca leu e 145}P 124.812 21.087 -35.54
{"}124.812 21.087 -35.540
{ca val e 146}122.285 23.698 -34.414
{ca cys e 147}119.149 25.159 -35.931
{ca leu e 148}117.29 28.388 -35.316
{ca ala e 149}113.729 29.605 -35.694
{ca thr e 150}113.403 33.321 -34.958
{ca gly e 151}110.987 36.236 -34.875
{ca phe e 152}107.871 34.091 -34.719
{ca tyr e 153}104.659 34.911 -32.905
{ca pro e 154}102.731 33.358 -31.255
{ca asp e 155}104.999 30.783 -29.548
{ca his e 156}103.142 28.017 -31.429
{ca val e 157}105.80 25.868 -33.180
{ca glu e 158}106.57 22.175 -33.789
{ca leu e 159}110.272 21.703 -34.693
{ca ser e 160}112.048 18.554 -35.963
{ca trp e 161}115.213 17.154 -37.645
{ca trp e 162}114.81 15.141 -40.865
{ca val e 163}117.815 13.326 -42.323
{ca asn e 164}117.448 11.807 -45.811
{ca gly e 165}113.662 12.172 -45.603
{ca lys e 166}113.113 10.512 -42.222
{ca glu e 167}113.022 12.417 -38.947
{ca val e 168}115.481 11.566 -36.187
{ca his e 169}114.989 11.771 -32.42
{ca ser e 170}118.228 10.089 -31.422
{ca gly e 171}120.508 13.131 -31.164
{ca val e 172}117.851 15.838 -31.263
{ca ser e 173}117.63 18.176 -28.267
{ca thr e 174}115.51 21.29 -28.791
{ca asp e 175}114.656 23.909 -26.158
{ca pro e 176}111.672 23.137 -23.861
{ca gln e 177}109.821 26.408 -24.569
{ca pro e 178}110.466 29.261 -27.096
{ca leu e 179}112.819 31.968 -25.779
{ca tyr e 190}P 109.892 34.533 -30.038
{"}109.892 34.533 -30.038
{ca ala e 191}112.983 32.527 -31.001
{ca leu e 192}113.927 28.864 -30.62
{ca ser e 193}117.161 26.883 -30.67
{ca ser e 194}117.962 23.21 -31.299
{ca arg e 195}120.898 20.773 -31.543
{ca leu e 196}121.724 17.641 -33.561
{ca arg e 197}125.147 16.32 -32.666
{ca val e 198}126.458 13.464 -34.768
{ca ser e 199}130.099 12.453 -35.142
{ca ala e 200}132.204 13.378 -38.166
{ca thr e 201}131.714 10.079 -40.044
{ca phe e 202}128.034 10.63 -40.982
{ca trp e 203}128.332 14.406 -41.481
{ca gln e 204}131.41 14.19 -43.71
{ca asn e 205}129.522 11.993 -46.175
{ca pro e 206}128.632 14.242 -49.171
{ca arg e 207}125.428 12.363 -50.014
{ca asn e 208}123.385 12.827 -46.815
{ca his e 209}121.091 15.831 -46.356
{ca phe e 210}119.803 17.263 -43.063
{ca arg e 211}116.67 19.391 -42.773
{ca cys e 212}115.426 21.394 -39.822
{ca gln e 213}111.655 21.56 -40.162
{ca val e 214}109.412 24.008 -38.252
{ca gln e 215}105.616 23.757 -38.218
{ca phe e 216}104.022 27.135 -37.597
{ca tyr e 217}100.468 27.751 -36.379
{ca gly e 218}99.008 31.072 -37.472
{ca leu e 219}96.29 33.187 -39.098
{ca ala e 230}P 98.384 39.943 -44.172
{"}98.384 39.943 -44.172
{ca lys e 231}99.53 36.412 -45.142
{ca pro e 232}101.132 34.506 -42.217
{ca val e 233}99.026 31.328 -42.703
{ca thr e 234}100.005 28.172 -40.788
{ca gln e 235}103.264 27.186 -42.546
{ca ile e 236}106.212 24.781 -42.624
{ca val e 237}109.451 26.77 -42.731
{ca ser e 238}112.581 24.64 -43.151
{ca ala e 239}116.361 25.005 -43.493
{ca glu e 240}119.012 22.571 -44.76
{ca ala e 241}122.654 21.658 -45.338
{ca trp e 242}124.421 18.743 -47.002
{ca gly e 243}127.129 16.605 -45.457
{ca arg e 244}130.248 18.549 -46.412
{ca ala e 245}133.443 16.909 -47.715
{ca asp e 246}136.072 18.507 -45.41
@subgroup {side ch}
@vectorlist {SS} color= yellow
{ca cys e 23}P 86.778 17.936 -25.581
{cb cys e 23}87.028 18.424 -24.159
{sg cys e 23}87.811 17.124 -23.159
{sg cys e 92}88.138 18.017 -21.371
{cb cys e 92}89.792 18.715 -21.556
{ca cys e 92}90.44 19.087 -20.231
{ca cys e 147}P 119.149 25.159 -35.931
{cb cys e 147}117.985 24.193 -36.01
{sg cys e 147}116.676 24.667 -37.166
{sg cys e 212}115.776 22.889 -37.52
{cb cys e 212}116.328 22.444 -39.187
{ca cys e 212}115.426 21.394 -39.822

@kinemage 6
@caption  (B&T Fig. 15.24)
Four successive type III domains from fibronectin.  In the close-up of domain 10, the RGD loop is labeled, the rear 3-strand beta sheet is in orange, and the front 4-strand beta sheet is in seagreen. (from PDB file 1FNF) 
@onewidth
@viewid {overview}
@zoom 1.1
@zslab 200
@center 17.892 2.385 3.36
@matrix
-0.791976 -.187742 .580971 .577915 -.537454 .614131 .196947 .822129 .534149
@2viewid {Fig. 15.24}
@2zoom 3.45
@2zslab 200
@2center 20.645 25.440 -48.025
@2matrix
-0.659358 -.527032 .536177 .711533 -.207092 .671441 -.242833 .824227 .511548
@group {1FNF}
@subgroup {dom 7} dominant
@vectorlist {Calphas} color= white
{ca pro 1142}P 15.416 -25.663 70.682
{"}15.416 -25.663 70.682
{ca leu 1143}15.523 -22.979 68.01
{ca ser 1144}12.524 -21.68 66.084
{ca pro 1145}13.268 -21.487 62.340
{ca pro 1146}12.94 -18.365 60.187
{ca thr 1147}9.506 -17.764 58.673
{ca asn 1148}8.198 -15.739 55.737
{ca leu 1149}10.857 -16.917 53.302
{ca his 1150}11.099 -14.891 50.081
{ca leu 1151}13.062 -15.89 46.977
{ca glu 1152}13.828 -13.238 44.337
{ca ala 1153}15.735 -14.298 41.224
{ca asn 1154}16.949 -11.605 38.845
{ca pro 1155}15.532 -12.218 35.303
{ca asp 1156}19.033 -12.184 33.831
{ca thr 1157}20.035 -14.853 36.352
{ca gly 1158}22.861 -13.912 38.659
{ca val 1159}21.553 -12.338 41.854
{ca leu 1160}19.027 -14.37 43.857
{ca thr 1161}17.96 -12.514 46.99
{ca val 1162}16.90 -14.68 49.952
{ca ser 1163}14.903 -12.883 52.66
{ca trp 1164}13.144 -14.104 55.793
{ca glu 1165}11.413 -13.104 58.99
{ca arg 1166}13.888 -13.601 61.83
{ca ser 1167}13.596 -16.495 64.332
{ca thr 1168}11.649 -15.709 67.505
{ca thr 1169}14.265 -17.491 69.636
{ca pro 1170}16.571 -15.034 71.401
{ca asp 1171}20.333 -15.461 71.918
{ca ile 1172}21.123 -17.115 68.586
{ca thr 1173}24.36 -16.528 66.613
{ca gly 1174}23.358 -16.406 62.948
{ca tyr 1175}21.656 -17.983 59.962
{ca arg 1176}22.906 -20.438 57.365
{ca ile 1177}21.438 -20.587 53.86
{ca thr 1178}21.848 -23.219 51.132
{ca thr 1179}20.977 -23.55 47.411
{ca thr 1180}20.811 -26.966 45.758
{ca pro 1181}19.468 -28.285 42.407
{ca thr 1182}16.041 -29.80 43.055
{ca asn 1183}15.54 -33.591 43.159
{ca gly 1184}19.299 -34.111 43.138
{ca gln 1185}20.992 -33.037 39.921
{ca gln 1186}24.229 -31.479 38.686
{ca gly 1187}24.27 -27.754 39.271
{ca asn 1188}25.708 -25.276 41.748
{ca ser 1189}24.902 -26.277 45.335
{ca leu 1190}26.07 -23.335 47.435
{ca glu 1191}25.872 -22.092 51.015
{ca glu 1192}26.136 -18.749 52.777
{ca val 1193}26.128 -17.585 56.422
{ca val 1194}24.857 -14.324 57.918
{ca his 1195}24.697 -12.743 61.393
{ca ala 1196}21.772 -12.85 63.794
{ca asp 1197}20.84 -9.242 63.064
{ca gln 1198}20.86 -9.948 59.316
{ca ser 1199}17.72 -11.247 57.587
{ca ser 1200}18.793 -11.48 53.945
{ca cys 1201}21.546 -12.917 51.757
{ca thr 1202}22.233 -13.051 48.014
{ca phe 1203}23.354 -15.914 45.783
{ca asp 1204}24.878 -14.064 42.843
{ca asn 1205}26.064 -17.289 41.201
{ca leu 1206}23.186 -19.571 40.205
{ca ser 1207}22.578 -21.493 36.977
{ca pro 1208}19.703 -19.90 34.941
{ca gly 1209}16.672 -21.922 33.894
{ca leu 1210}17.319 -24.611 36.512
{ca glu 1211}15.464 -25.418 39.737
{ca tyr 1212}17.003 -24.866 43.177
{ca asn 1213}15.78 -25.544 46.710
{ca val 1214}16.733 -22.836 49.177
{ca ser 1215}16.851 -23.578 52.901
{ca val 1216}17.534 -21.168 55.738
{ca tyr 1217}18.393 -22.378 59.239
{ca thr 1218}18.476 -20.486 62.543
{ca val 1219}21.89 -21.106 64.151
{ca lys 1220}23.143 -20.869 67.760
{ca asp 1221}26.73 -22.049 68.021
{ca asp 1222}26.668 -25.744 67.118
{ca lys 1223}22.849 -26.062 67.069
{ca glu 1224}20.355 -25.379 64.254
{ca ser 1225}16.616 -25.267 63.765
{ca val 1226}14.731 -27.222 61.124
{ca pro 1227}14.98 -25.204 57.902
{ca ile 1228}12.43 -23.138 56.050
{ca ser 1229}12.827 -24.324 52.462
{ca asp 1230}11.308 -23.28 49.151
{ca thr 1231}12.157 -23.926 45.517
{ca ile 1232}12.767 -21.518 42.603
{ca ile 1233}13.666 -21.779 38.905
{ca pro 1234}15.704 -18.702 37.976
{ca ala 1235}14.601 -16.993 34.753
{ca val 1236}16.418 -17.585 31.469
{ca pro 1237}18.737 -14.681 30.596
@subgroup {dom 8} dominant
@vectorlist {Calphas} color= yellowtint
{ca pro 1237}P 18.737 -14.681 30.596
{ca pro 1238}17.524 -12.839 27.517
{ca pro 1239}20.007 -11.713 24.869
{ca thr 1240}20.818 -8.006 24.581
{ca asp 1241}22.34 -5.499 22.158
{ca leu 1242}19.80 -5.575 19.277
{ca arg 1243}21.41 -3.993 16.197
{ca phe 1244}19.722 -3.589 12.802
{ca thr 1245}21.985 -3.472 9.733
{ca asn 1246}21.786 -4.107 5.964
{ca ile 1247}18.361 -2.441 5.663
{ca gly 1248}16.855 -2.962 2.235
{ca pro 1249}13.357 -2.389 0.859
{ca asp 1250}12.437 -6.00 1.611
{ca thr 1251}15.159 -7.183 3.981
{ca met 1252}17.117 -6.438 7.175
{ca arg 1253}19.821 -8.151 9.246
{ca val 1254}19.114 -8.325 12.972
{ca thr 1255}22.011 -8.984 15.373
{ca trp 1256}22.079 -9.611 19.131
{ca ala 1257}24.457 -10.367 21.993
{ca pro 1258}23.567 -13.777 23.423
{ca pro 1259}23.461 -14.333 27.226
{ca pro 1260}26.972 -15.02 28.549
{ca ser 1261}28.109 -18.377 29.933
{ca ile 1262}24.943 -20.323 28.993
{ca asp 1263}24.302 -23.175 26.564
{ca leu 1264}20.908 -22.207 25.147
{ca thr 1265}18.764 -24.619 23.208
{ca asn 1266}18.265 -21.978 20.473
{ca phe 1267}16.911 -18.449 19.964
{ca leu 1268}13.377 -17.597 18.976
{ca val 1269}12.874 -14.689 16.580
{ca arg 1270}9.409 -13.20 16.213
{ca tyr 1271}8.637 -10.267 13.954
{ca ser 1272}5.656 -8.531 12.375
{ca pro 1273}4.612 -5.213 10.826
{ca val 1274}3.972 -2.59 13.510
{ca lys 1275}0.543 -1.894 11.966
{ca asn 1276}-0.129 -5.596 11.319
{ca glu 1277}0.573 -7.187 14.711
{ca glu 1278}-1.344 -10.419 14.068
{ca asp 1279}0.714 -11.004 10.921
{ca val 1280}3.643 -12.441 12.856
{ca ala 1281}6.273 -14.934 11.744
{ca glu 1282}8.498 -17.096 13.934
{ca leu 1283}12.024 -18.466 13.474
{ca ser 1284}14.125 -20.803 15.608
{ca ile 1285}17.821 -19.911 15.408
{ca ser 1286}20.88 -22.041 16.164
{ca pro 1287}22.225 -21.161 19.616
{ca ser 1288}25.582 -20.655 17.875
{ca asp 1289}24.205 -17.806 15.764
{ca asn 1290}23.648 -14.161 16.734
{ca ala 1291}21.838 -12.922 13.666
{ca val 1292}18.918 -13.427 11.313
{ca val 1293}18.471 -11.892 7.861
{ca leu 1294}14.771 -11.255 7.405
{ca thr 1295}13.586 -11.395 3.794
{ca asn 1296}10.484 -10.907 1.644
{ca leu 1297}9.457 -7.917 3.721
{ca leu 1298}7.144 -5.084 2.609
{ca pro 1299}9.044 -1.856 1.617
{ca gly 1300}8.774 1.297 3.717
{ca thr 1301}7.148 -0.759 6.453
{ca glu 1302}8.03 -0.619 10.146
{ca tyr 1303}8.514 -4.043 11.709
{ca val 1304}8.692 -5.056 15.358
{ca val 1305}11.433 -7.636 15.922
{ca ser 1306}12.086 -9.618 19.096
{ca val 1307}14.669 -12.303 19.867
{ca ser 1308}14.191 -14.669 22.824
{ca ser 1309}16.654 -17.111 24.405
{ca val 1310}15.417 -20.646 25.027
{ca tyr 1311}16.496 -23.495 27.301
{ca glu 1312}14.415 -26.679 27.232
{ca gln 1313}10.955 -25.139 27.740
{ca his 1314}12.141 -21.935 29.327
{ca glu 1315}12.013 -18.86 27.117
{ca ser 1316}13.392 -15.517 28.355
{ca thr 1317}11.983 -11.994 28.049
{ca pro 1318}12.113 -10.929 24.417
{ca leu 1319}14.872 -8.614 23.275
{ca arg 1320}12.703 -6.203 21.290
{ca gly 1321}13.274 -3.426 18.758
{ca arg 1322}11.646 -1.728 15.733
{ca gln 1323}13.00 -1.053 12.249
{ca lys 1324}11.459 0.282 9.056
{ca thr 1325}12.375 -1.228 5.700
{ca gly 1326}13.649 1.035 2.952
{ca leu 1327}11.782 2.459 0.007
@subgroup {dom 9} dominant
@vectorlist {Calphas} color= bluetint
{ca leu 1327}P 11.782 2.459 0.007
{ca asp 1328}11.549 0.417 -3.182
{ca ser 1329}12.574 2.109 -6.413
{ca pro 1330}10.068 3.347 -8.985
{ca thr 1331}10.108 1.193 -12.112
{ca gly 1332}9.435 1.229 -15.831
{ca ile 1333}11.061 4.538 -16.801
{ca asp 1334}9.518 5.473 -20.128
{ca phe 1335}9.829 8.555 -22.393
{ca ser 1336}7.317 10.311 -24.722
{ca asp 1337}6.613 13.706 -26.408
{ca ile 1338}10.224 13.824 -27.574
{ca thr 1339}11.179 17.056 -29.304
{ca ala 1340}14.384 18.969 -30.026
{ca asn 1341}14.418 20.671 -26.660
{ca ser 1342}12.252 18.491 -24.425
{ca phe 1343}10.635 15.142 -23.614
{ca thr 1344}8.271 13.675 -21.048
{ca val 1345}9.556 11.139 -18.512
{ca his 1346}7.202 8.555 -16.974
{ca trp 1347}7.747 6.016 -14.184
{ca ile 1348}5.764 3.548 -12.082
{ca ala 1349}5.186 4.272 -8.400
{ca pro 1350}6.829 1.998 -5.797
{ca arg 1351}4.88 -0.135 -3.287
{ca ala 1352}6.103 1.894 -0.288
{ca thr 1353}4.426 5.068 0.901
{ca ile 1354}6.301 8.111 -0.413
{ca thr 1355}5.811 11.867 -0.499
{ca gly 1356}7.431 12.629 -3.838
{ca tyr 1357}10.29 11.999 -6.227
{ca arg 1358}13.526 13.679 -7.177
{ca ile 1359}14.23 13.511 -10.899
{ca arg 1360}17.708 14.414 -12.102
{ca his 1361}18.94 14.706 -15.691
{ca his 1362}22.146 15.508 -17.542
{ca pro 1363}23.938 15.004 -20.878
{ca glu 1364}27.346 13.253 -21.121
{ca his 1365}29.313 16.423 -20.326
{ca phe 1366}28.162 19.336 -18.208
{ca ser 1367}29.914 21.982 -16.115
{ca gly 1368}28.23 22.121 -12.699
{ca arg 1369}25.328 20.637 -10.742
{ca pro 1370}22.838 18.511 -12.744
{ca arg 1371}19.376 20.085 -12.882
{ca glu 1372}16.811 18.427 -10.621
{ca asp 1373}13.059 18.483 -10.077
{ca arg 1374}11.185 17.691 -6.834
{ca val 1375}7.57 16.625 -7.321
{ca pro 1376}4.698 15.413 -5.071
{ca his 1377}3.788 11.724 -4.757
{ca ser 1378}0.797 12.411 -7.003
{ca arg 1379}3.096 12.77 -10.041
{ca asn 1380}4.275 9.886 -12.245
{ca ser 1381}5.69 11.90 -15.159
{ca ile 1382}7.50 15.148 -15.894
{ca thr 1383}8.244 17.053 -19.094
{ca leu 1384}11.863 18.21 -19.067
{ca thr 1385}12.347 21.45 -20.993
{ca asn 1386}15.171 23.634 -22.328
{ca leu 1387}17.10 20.602 -23.484
{ca thr 1388}19.707 20.949 -26.222
{ca pro 1389}18.855 19.393 -29.647
{ca gly 1390}20.114 15.943 -30.585
{ca thr 1391}21.413 15.305 -27.094
{ca glu 1392}21.469 12.141 -25.011
{ca tyr 1393}20.253 12.572 -21.44
{ca val 1394}20.67 10.32 -18.418
{ca val 1395}17.551 10.597 -16.242
{ca ser 1396}17.492 9.336 -12.645
{ca ile 1397}14.468 9.162 -10.365
{ca val 1398}14.36 8.277 -6.685
{ca ala 1399}11.233 8.026 -4.589
{ca leu 1400}11.403 9.986 -1.354
{ca asn 1401}9.677 9.973 2.027
{ca gly 1402}10.985 12.656 4.301
{ca arg 1403}14.746 12.256 4.411
{ca glu 1404}14.265 8.67 3.128
{ca glu 1405}15.306 7.875 -0.422
{ca ser 1406}14.901 4.792 -2.56
{ca pro 1407}17.527 3.358 -4.869
{ca leu 1408}17.694 4.942 -8.344
{ca leu 1409}15.534 4.169 -11.364
{ca ile 1410}17.766 5.163 -14.27
{ca gly 1411}17.332 5.655 -18.004
{ca gln 1412}18.66 7.538 -21.044
{ca gln 1413}16.889 9.494 -23.771
{ca ser 1414}18.129 11.609 -26.653
{ca thr 1415}16.325 14.699 -27.907
{ca val 1416}15.444 14.859 -31.587
{ca ser 1417}17.924 16.733 -33.776
@subgroup {dom 10} dominant
@vectorlist {Calphas} color= white
{ca ser 1417}P 17.924 16.733 -33.776
{ca asp 1418} 16.498 19.878 -35.382
{ca val 1419}19.342 20.021 -37.919
{ca pro 1420}18.643 19.323 -41.606
{ca pro 1430}P 27.039 27.058 -65.198
{ca thr 1431}25.43 29.683 -62.954
{ca ala 1439}P 13.928 17.894 -43.245
{ca pro 1440}14.712 17.239 -39.598
{ca ala 1441}12.126 15.357 -37.511
{ca val 1442}10.702 18.651 -36.155
{ca thr 1443}8.374 21.362 -37.447
{ca val 1444}10.412 23.912 -39.373
{ca arg 1445}8.807 27.298 -39.968
{ca tyr 1446}11.208 27.972 -42.856
{ca glu 1453}P 32.632 31.38 -52.193
{ca thr 1454}34.425 28.738 -50.144
{ca gly 1455}37.128 30.426 -48.11
{ca gly 1456}35.949 33.758 -49.473
{ca asn 1457}35.565 35.336 -46.011
{ca ser 1458}33.252 38.031 -47.482
{ca pro 1459}29.527 38.336 -46.552
{ca val 1460}27.405 35.317 -47.509
{ca pro 1466}P 9.13 27.554 -46.61
{ca gly 1467}9.281 24.836 -43.979
{ca ser 1468}7.143 22.62 -46.185
{ca lys 1469}9.815 22.363 -48.892
{ca ser 1470}13.285 20.80 -48.896
{ca gly 1476}P 23.508 33.549 -60.719
{ca leu 1477}26.492 31.713 -59.278
{ca lys 1478}29.908 31.881 -60.951
{ca pro 1479}31.775 28.905 -62.489
{ca gly 1480}35.272 28.117 -61.28
{ca val 1481}34.064 29.322 -57.901
{ca asp 1482}33.82 26.86 -55.023
{ca val 1490}P 14.231 27.957 -38.37
{ca thr 1491}11.708 26.623 -35.864
{ca gly 1492}11.18 29.674 -33.667
{ca arg 1493}9.422 32.953 -34.296
{ca gly 1494}9.495 36.633 -33.401
{ca asp 1495}12.459 38.882 -34.188
{ca ser 1496}14.943 36.263 -33.019
{ca pro 1497}13.619 32.918 -34.297
{ca ala 1498}15.096 29.735 -32.877
{ca ser 1499}17.224 28.125 -35.547
{ca arg 1508}P 32.819 21.408 -56.943
{ca thr 1509}32.264 23.769 -59.906
@vectorlist {b rear} color= orange
{arrow}P 26.077 24.786 -65.601
{ca pro 1430} 27.039 27.058 -65.198
{arrow} 24.82 26.855 -64.065
{arrow}P 16.209 16.943 -43.625
{ca ala 1439} 13.928 17.894 -43.245
{arrow} 14.051 16.847 -45.512
{arrow}P 22.686 31.189 -60.644
{ca gly 1476} 23.508 33.549 -60.719
{arrow} 21.495 33.391 -59.245
{ca pro 1420}P 18.643 19.323 -41.606
{ca arg 1421}20.522 16.443 -43.208
{ca asp 1422}21.881 14.991 -46.434
{ca leu 1423}22.155 18.423 -48.024
{ca glu 1424}23.345 17.935 -51.597
{ca val 1425}23.305 19.288 -55.135
{ca val 1426}20.625 17.541 -57.230
{ca ala 1427}20.965 19.517 -60.484
{ca ala 1428}23.365 22.24 -61.716
{ca thr 1429}24.051 24.733 -64.512
{ca pro 1430}27.039 27.058 -65.198
{ca thr 1431}P 25.43 29.683 -62.954
{ca ser 1432}23.219 27.664 -60.619
{ca leu 1433}22.762 24.702 -58.291
{ca leu 1434}19.541 22.927 -57.351
{ca ile 1435}20.046 21.826 -53.769
{ca ser 1436}18.108 19.289 -51.736
{ca trp 1437}18.169 18.151 -48.106
{ca asp 1438}16.143 16.053 -45.684
{ca ala 1439}13.928 17.894 -43.245
{ca ser 1470}P 13.285 20.80 -48.896
{ca thr 1471}14.534 21.986 -52.283
{ca ala 1472}16.024 25.235 -53.557
{ca thr 1473}17.723 26.765 -56.565
{ca ile 1474}20.668 29.106 -56.145
{ca ser 1475}20.885 31.22 -59.286
{ca gly 1476}23.508 33.549 -60.719
@vectorlist {b front} color= sea 
{arrow}P 30.379 32.411 -52.527
{ca glu 1453} 32.632 31.38 -52.193
{arrow} 31.33 31.299 -50.061
{arrow}P 11.609 27.267 -46.466
{ca pro 1466} 9.13 27.554 -46.61
{arrow} 10.248 28.848 -48.433
{arrow}P 15.759 26.025 -37.943
{ca val 1490} 14.231 27.957 -38.37
{arrow} 14.596 26.673 -40.484
{arrow}P 31.116 20.667 -55.269
{ca arg 1508} 32.819 21.408 -56.943
{arrow} 31.923 23.385 -55.703
{ca tyr 1446}P 11.208 27.972 -42.856
{ca tyr 1447}14.794 27.202 -43.846
{ca arg 1448}17.566 29.766 -44.198
{ca ile 1449}20.055 29.06 -46.995
{ca thr 1450}23.368 30.929 -47.240
{ca tyr 1451}25.984 30.688 -49.944
{ca gly 1452}29.344 32.259 -50.53
{ca glu 1453}32.632 31.38 -52.193
{ca val 1460}P 27.405 35.317 -47.509
{ca gln 1461}24.185 35.831 -49.44
{ca glu 1462}20.989 34.271 -48.155
{ca phe 1463}17.28 33.701 -48.694
{ca thr 1464}14.572 31.509 -47.197
{ca val 1465}12.496 28.497 -48.181
{ca pro 1466}9.13 27.554 -46.61
{ca asp 1482}P 33.82 26.86 -55.023
{ca tyr 1483}30.621 27.723 -53.108
{ca thr 1484}29.873 26.793 -49.502
{ca ile 1485}26.105 26.236 -49.179
{ca thr 1486}24.55 26.185 -45.713
{ca val 1487}20.983 25.421 -44.616
{ca tyr 1488}19.373 26.105 -41.196
{ca ala 1489}15.981 24.983 -39.93
{ca val 1490}14.231 27.957 -38.37
{ca ser 1499}P 17.224 28.125 -35.547
{ca ser 1500}18.903 24.748 -35.664
{ca lys 1501}22.652 24.388 -35.975
{ca pro 1502}23.798 24.542 -39.63
{ca ile 1503}24.545 21.845 -42.156
{ca ser 1504}26.576 22.746 -45.223
{ca ile 1505}28.641 21.456 -48.128
{ca asn 1506}31.179 22.914 -50.557
{ca tyr 1507}30.415 22.552 -54.247
{ca arg 1508}32.819 21.408 -56.943
@labellist {RGD} color= cyan
{ R}9.422 32.953 -34.296
{ G}9.495 36.633 -33.401
{ D}12.459 38.882 -34.188

@kinemage 7
@caption (B&T Fig. 15.25)
Ribbon drawing of the first two domains of CD4, the first in red and the second in green, with yellow disulfides. (from PDB file 3CD4) 
@onewidth
@viewid {fig 15.25}
@zoom 1.0
@zslab 200
@center 26.639 20.319 60.332
@matrix
0.276561 .493807 .82442 -.858133 .513059 -.01944 -.432576 -.702086 .565644
@2viewid {domain 1}
@2zoom 1.6
@2zslab 200
@2center 31.230 33.104 40.433
@2matrix
0.320206 .502649 -.803002 .21864 .785537 .578903 .921772 -.360936 .141635
@3viewid {domain 2}
@3zoom 1.5
@3zslab 200
@3center 17.192 18.877 68.443
@3matrix
-.727597 .532544 .432436 -.201815 .436305 -.876874 -.655648 -.725282 -.209979
@master {edge}
@master {face}
@master {SS}
@master {ends}
@group {3cd4}
@subgroup {domain 1} dominant
@balllist {S} color= gold master= {SS} radius= .250
{sg cys 16}29.319 33.784 40.301
{sg cys 84}31.23 33.104 40.433
@vectorlist {scd1} color= yellow master= {SS}
{cb cys 16}P 28.151 32.425 40.667
{sg cys 16}width2 29.319 33.784 40.301
{cb cys 84}P 31.622 33.453 42.177
{sg cys 84}width2 31.23 33.104 40.433
{cb cys 16}P 28.151 32.425 40.667
{sg cys 16}width2 29.319 33.784 40.301
{sg cys 84}width2 31.23 33.104 40.433
{cb cys 84}width2 31.622 33.453 42.177
{avg of 2 pts}width2 33.828 34.317 42.680
{R1 cys 16}P 25.753 32.748 40.768
{cb cys 16}width2 28.151 32.425 40.667
@labellist {terminus} master= {ends}
{ N-t}27.819 38.292 52.261
@vectorlist {ribbon} color= red nobutton master= {edge}
{R1 lys 1}P width4 27.819 38.292 52.261
{"}width4 27.711 38.177 52.220
{"}width4 27.432 37.864 52.128
{"}width4 27.054 37.406 52.036
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 lys 2}P 27.054 37.406 52.036
{R1 lys 2}width4 26.645 36.851 51.993
{"}width4 26.265 36.243 52.035
{"}width4 25.929 35.594 52.151
{"}width4 25.64 34.908 52.316
{"}26.495 34.763 52.001
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 lys 2}P 27.054 37.406 52.036
{R2 lys 2}width4 26.645 36.851 51.993
{"}width4 26.265 36.243 52.035
{"}width4 25.929 35.594 52.151
{"}width4 25.64 34.908 52.316
{"}24.785 35.053 52.630
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 val 3}P 26.495 34.763 52.001
{R1 val 3}26.321 34.056 52.299
{"}26.175 33.308 52.566
{"}26.048 32.533 52.804
{"}25.928 31.745 53.028
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 val 3}P 24.785 35.053 52.630
{R2 val 3}24.485 34.325 52.710
{"}24.261 33.581 52.828
{"}24.096 32.822 52.972
{"}23.965 32.044 53.130
@ribbonlist {ribbon} color= red nobutton master= {face}
{R1 val 3}P 26.495 34.763 52.001
{R2 val 3}24.785 35.053 52.630
{R1 val 3}P 26.321 34.056 52.299
{R2 val 3}24.485 34.325 52.710
{R1 val 3}P 26.175 33.308 52.566
{R2 val 3}24.261 33.581 52.828
{R1 val 3}P 26.048 32.533 52.804
{R2 val 3}24.096 32.822 52.972
{R1 val 3}P 25.928 31.745 53.028
{R2 val 3}23.965 32.044 53.130
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 val 4}P 25.928 31.745 53.028
{R1 val 4}25.806 30.96 53.251
{"}25.675 30.189 53.484
{"}25.541 29.425 53.729
{"}25.416 28.66 53.987
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 val 4}P 23.965 32.044 53.130
{R2 val 4}23.845 31.245 53.287
{"}23.717 30.425 53.432
{"}23.591 29.591 53.565
{"}23.484 28.753 53.688
@ribbonlist {ribbon} color= red nobutton master= {face}
{R1 val 4}P 25.928 31.745 53.028
{R2 val 4}23.965 32.044 53.130
{R1 val 4}P 25.806 30.96 53.251
{R2 val 4}23.845 31.245 53.287
{R1 val 4}P 25.675 30.189 53.484
{R2 val 4}23.717 30.425 53.432
{R1 val 4}P 25.541 29.425 53.729
{R2 val 4}23.591 29.591 53.565
{R1 val 4}P 25.416 28.66 53.987
{R2 val 4}23.484 28.753 53.688
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 leu 5}P 25.416 28.66 53.987
{R1 leu 5}25.31 27.884 54.256
{"}25.229 27.089 54.536
{"}25.166 26.282 54.815
{"}25.108 25.472 55.083
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 leu 5}P 23.484 28.753 53.688
{R2 leu 5}23.412 27.922 53.803
{"}23.388 27.103 53.913
{"}23.41 26.285 54.013
{"}23.471 25.45 54.100
@ribbonlist {ribbon} color= red nobutton master= {face}
{R1 leu 5}P 25.416 28.66 53.987
{R2 leu 5}23.484 28.753 53.688
{R1 leu 5}P 25.31 27.884 54.256
{R2 leu 5}23.412 27.922 53.803
{R1 leu 5}P 25.229 27.089 54.536
{R2 leu 5}23.388 27.103 53.913
{R1 leu 5}P 25.166 26.282 54.815
{R2 leu 5}23.41 26.285 54.013
{R1 leu 5}P 25.108 25.472 55.083
{R2 leu 5}23.471 25.45 54.100
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 gly 6}P 25.108 25.472 55.083
{R1 gly 6}25.042 24.668 55.327
{"}24.963 23.879 55.541
{"}P 24.325 23.775 54.881
{"}25.601 23.982 56.200
{"}24.449 22.079 55.134
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 gly 6}P 23.471 25.45 54.100
{R2 gly 6}23.564 24.581 54.169
{"}23.687 23.671 54.221
{"}P 24.325 23.775 54.881
{"}23.048 23.568 53.562
{"}24.449 22.079 55.134
@ribbonlist {ribbon} color= red nobutton master= {face}
{R1 gly 6}P 25.108 25.472 55.083
{R2 gly 6}23.471 25.45 54.100
{R1 gly 6}P 25.042 24.668 55.327
{R2 gly 6}23.564 24.581 54.169
{R1 gly 6}P 24.963 23.879 55.541
{R2 gly 6}23.687 23.671 54.221
{R1 gly 6}P 25.601 23.982 56.200
{R2 gly 6}23.048 23.568 53.562
{R1 gly 6}P 24.449 22.079 55.134
{R2 gly 6}24.449 22.079 55.134
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 lys 7}P 24.449 22.079 55.134
{R1 lys 7}width4 24.587 21.26 55.289
{"}width4 24.797 20.475 55.479
{"}width4 25.081 19.71 55.674
{"}width4 25.441 18.949 55.837
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 lys 7}P 24.449 22.079 55.134
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 lys 8}P 25.441 18.949 55.837
{R1 lys 8}width4 25.878 18.175 55.929
{"}width4 26.376 17.386 55.919
{"}width4 26.853 16.635 55.791
{"}width4 27.214 15.99 55.539
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 lys 8}P 25.441 18.949 55.837
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 gly 9}P 27.214 15.99 55.539
{R1 gly 9}width4 27.362 15.52 55.154
{"}width4 27.231 15.275 54.635
{"}width4 26.891 15.234 54.015
{"}width4 26.444 15.36 53.334
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 gly 9}P 27.214 15.99 55.539
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 asp 10}P 26.444 15.36 53.334
{R1 asp 10}width4 25.991 15.612 52.632
{"}width4 25.615 15.96 51.945
{"}width4 25.331 16.389 51.286
{"}width4 25.131 16.892 50.665
{"}24.419 16.608 50.364
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 asp 10}P 26.444 15.36 53.334
{R2 asp 10}width4 25.991 15.612 52.632
{"}width4 25.615 15.96 51.945
{"}width4 25.331 16.389 51.286
{"}width4 25.131 16.892 50.665
{"}25.843 17.176 50.965
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 thr 11}P 24.419 16.608 50.364
{R1 thr 11}24.182 17.297 49.887
{"}24.061 18.006 49.479
{"}24.03 18.733 49.121
{"}24.054 19.487 48.791
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 thr 11}P 25.843 17.176 50.965
{R2 thr 11}25.842 17.627 50.293
{"}25.87 18.176 49.657
{"}25.905 18.801 49.059
{"}25.931 19.469 48.499
@ribbonlist {ribbon} color= red nobutton master= {face}
{R1 thr 11}P 24.419 16.608 50.364
{R2 thr 11}25.843 17.176 50.965
{R1 thr 11}P 24.182 17.297 49.887
{R2 thr 11}25.842 17.627 50.293
{R1 thr 11}P 24.061 18.006 49.479
{R2 thr 11}25.87 18.176 49.657
{R1 thr 11}P 24.03 18.733 49.121
{R2 thr 11}25.905 18.801 49.059
{R1 thr 11}P 24.054 19.487 48.791
{R2 thr 11}25.931 19.469 48.499
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R1 val 12}P 24.054 19.487 48.791
{R1 val 12}24.096 20.276 48.465
{"}24.128 21.101 48.127
{"}24.155 21.943 47.779
{"}24.188 22.779 47.430
@vectorlist {ribbon} color= red nobutton master= {edge}
{ R2 val 12}P 25.931 19.469 48.499
{R2 val 12}25.932 20.149 47.976
{"}25.899 20.816 47.490
{"}25.854 21.477 47.039
{"}25.823 22.145 46.624
@ribbonlist {ribbon} color= red nobutton master= {face}
{R1 val 12}P 24.054 19.487 48.791
{R2 val 12}25.931 19.469 48.499
{R1 val 12}P 24.096 20.276 48.465
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