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Kinemage Supplement to Branden & Tooze "Introduction to Protein Structure", Second Edition
Chapter 16 - THE STRUCTURE OF SPHERICAL VIRUSES
*{Kin 0}*  T=1 viral symmetry DEMO
		Contents of file c16Virus.kin:
*{Kin 1}* Icosahedron, dodecahedron, cube, and symmetry axes (16.2-16.3)
*{Kin 2}* T=1 viral symmetry, vs icosahedron and dodecahedron (16.4-16.5)
*{Kin 3}* STNV subunits: icosahedral T=1 symmetry and axes (16.5b, 16.14a)
*{Kin 4}* TBSV subunits A vs C, conformational difference animated (16.8a)
*{Kin 5}* TBSV: 3 subunits around the pseudo-3fold axis in a T=3 virus (16.9)
*{Kin 6}* Jellyroll Greek key fold of viral proteins, for STNV (16.13, 16.14a)
*{Kin 7}* MS2 capsid protein dimer, with bound RNA (16.17-16.20)
*{Kin 8}* SV40 virus - pentamer & subunit organization (16.23-16.26)

     The spherical viruses protect their DNA or RNA with a shell made of multiple copies of one or a few types of protein subunit.  These subunits are arranged with icosahedral symmetry, in ways that can be related to the regular geometrical figures of the icosahedron (made of 20 equilateral triangles) or the dodecahedron (made of 12 pentagons).  In kinemages 1-3 we gradually build up more detail, first looking at just the bare geometry, then a symbolic representation of the virus placement, and then an example of subunits from a real virus.

     *{Kinemage 1}* (Figs. 16.2 and 16.3) shows how the icosahedron (in seagreen) and dodecahedron (hotpink) are related to each other and to a simple cube (gray).  Various views look down different symmetry axes.  Click on the "animate" button in View1 to step through a sequence that builds up these figures.
     First a cube is shown, which has a 3-fold symmetry axis at each corner and a 4-fold in the middle of each face.  Then lines are drawn in yellow through the center of each cube face, just long enough to equal the distance to an end of a neighboring such line.  Then the icosahedron is drawn, with edges from the preceding construction.  Finally, the pentagonal dodecahedron is added, whose vertices are in the center of the icosahedral faces.

     *{Kinemage 2}* relates T=1 viral symmetry to the icosahedron and dodecahedron (colored as in Kin. 1), using abstract symbols (yellowtint) to represent the positions of viral subunits.  Turn the pink "T1 triangles" on and the icosahedron off to see how this figure can be divided into 60 identical regions, so that 60 identical subunits can be packed together with icosahedral symmetry.  The five views are the same as in Kin.1, looking down the various symmetry axes.  To relate this figure to the familiar shape of a soccer ball, turn on just "soccer ball", and then turn the icosahedron on and off.

     *{Kinemage 3}* shows the T=1 symmetry figure as developed in Kin.2, with three real viral subunits in place from the T1 virus STNV (satellite tobacco necrosis virus).  If the white subunit is taken as reference, then the bluetint one is related to it by a 5-fold operation and the greentint one by a 3-fold operation.  Those symmetry axes are shown in cyan, coming out from the center of the viral particle, and labels for them can be turned on.  The subunits are rather triangular in shape and fit together neatly to make a continuous shell.  View2 is a side view with a 3-fold axis vertical, showing that the outside of the viral shell is rather flat around the 3-fold;  View3 has a 5-fold axis vertical, around which the subunits protrude more.

     *{Kinemage 4}* shows the monomers of a T=3 virus, which has 3 times as many subunits as a T1 virus (180 rather than 60).  In order to pack 180 chemically identical subunits into only 60 truly equivalent positions, the virus uses relatively minor conformational differences to achieve "quasi-equivalent" packing.  This kinemage illustrates these conformational differences between the A and the C subunits of the T=3 virus TBSV (tomato bushy stunt virus).  The A subunits pack closely together around a 5-fold axis, while C subunits alternate with Bs in a flatter arrangement around a pseudo-6-fold axis.  Animate to switch between subunit A (pink) and subunit B (seagreen), or turn them both on at once to compare.  They were superimposed using the s domains (darker color).  The two major changes are the hinging motion of the p domain which allows it to contact a twofold neighbor at a flatter angle in C subunits, and the ordering of the N-terminal arm in the C subunit, which fills what would otherwise be a gap in a widened contact between s domains.  View1 shows these differences from one end of the s domain, and View2 in a top view from outside the viral shell, more or less as in Fig. 16.8a.

     *{Kinemage 5}* shows one each of the A (pink), B (skyblue), and C (seagreen) subunits of TBSV as they fit together in the triangular repeating unit of the viral shell.  View1 is from the outside of the particle, as in the central portion of Fig. 16.9, while View2 looks tangent to the shell, with the local pseudo-3-fold axis vertical.  The darker-colored s domains form a continuous shell, while the lighter-colored p domains protrude to the outside (each p domain makes a dimer interaction with another nearby p domain, producing a distinct surface bump).  This triangle of 3 subunits replaces the single subunit of a T=1 virus, producing a much larger viral particle.  The yellowtint balls are calcium atoms that bind between subunits, and are involved in regulation of an expansion process that the viral shell can undergo.

     Almost all of the viral coat protein subunits have a "jellyroll" Greek key beta barrel structure, so named because the beta strands curl up around the structure in a pairwise fashion.  *{Kinemage 6}* illustrates this organization for the subunit of STNV, with the strand pairs colored to match Fig. 16.13 and 16.14.  Imagine that the whole length of the polypeptide chain is folded in half and paired up into a long, 2-stranded ribbon; then that ribbon wraps up in 4 segments to form the beta barrel.  Paired strands and their H-bonds are colored similarly, starting with green for the two termini and going through pink and blue to yellow for the central pair.  The connections between strands are in lighter colors.  Sections at the ends and the middle that are not part of the jellyroll are in white, and can be turned on with the "ends" button.

     *{Kinemage 7}* illustrates the MS2 viral capsid structure, which has a quite different fold from the jellyroll Greek keys.  The starting view shows a single subunit, with its 5-strand beta-sheet, N-terminal hairpin, and C-terminal helices (as in Fig. 16.17).  Animate for a tour of the structure:  first, the compact dimer of two subunits (as in Fig. 16.18), forming a large, flat beta-sheet on the inside surface of the dimer.  Next is the RNA fragment, a 5-basepair stem with a 4-base loop and a single-base bulge (as in Fig. 16.19);  the 3 bases that interact specifically with the MS2 protein are in orange.  Next is the complex of the RNA with a dimer of MS2 subunits (as in Fig. 16.20);  remember that this is just one piece from the full T=3 capsid. 
     In close-up, the next animations show details of the stacking of a Tyr side chain onto the U base at position -5, the steric and H-bond interactions that bind the A base at -4 to MS2 subunit a, the somewhat different interactions that bind the A base at -10 to the equivalent region of subunit b, and a well-braced double salt link between an Arg and an RNA phosphate. 

     *{Kinemage 8}* illustrates the organization of the SV40 virus particle, which has an unusual T=6 packing of pentamers with non-equivalent interactions that involve long chain-termini.  The starting view shows a central pentamer and 4 of its 6 different neighboring pentamers, with the strictly 5-fold pentamer in white and the others in colors similar to Fig. 16.23 or 16.26.  Notice that blue and orange chain ends intertwine for the lower pentamers, while the upper ones interact with white, green, and brown chain ends.  View2 looks down the axis of a local pentamer (like Fig. 16.24), showing the tight internal contacts; View3 is a side view of a pentamer, and View4 shows a piece of the capsid shell.
     To see the subunit organization, choose View5, turn on "hilites", and turn off all other groups except the first "SV40 unit".  The jellyroll Greek key beta barrel is colored in strand pairs by the convention of Fig. 16.13: yellow, blue, red, and green from the central hairpin back toward the ends; the intervening loops are in gray and the interacting chain termini in white.  Turn on "copy 2" briefly to see that the neighboring white subunit contributes a beta strand next to the yellow strand pair.  Notice that there is a gap at the lower left between the first green strand and the white chain end; turn on "copy 1" briefly to see that the chain end from the seagreen subunit inserts a short strand into that gap.  The long C-terminal tail of this subunit inserts similarly into the brown subunit at lower right.


    Copyright 1999 Jane S. and David C. Richardson.  Permission freely granted for educational, research, and personal use.  For program updates and more information, see http://kinemage.biochem.duke.edu.


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@caption  (B&T Fig. 16.4, 16.5)
T1 viral symmetry, related to the icosahedron (seagreen) and dodecahedron (hotpink), with symbols (yellowtint) to represent the positions of viral subunits.  The pink "T1 triangles" show how 60 identical objects can be packed together with icosahedral symmetry.

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{sq 5} 0.257 -0.105 1.058
{sq 5} 0.081 -0.194 1.086
{sq 5} 0.073 0.106 1.087
{sq 5} 0.484 -0.048 1.022
{squig 6} P -0.206 0. 1.066
{sq 6} -0.257 0.105 1.058
{sq 6} -0.081 0.194 1.086
{sq 6} -0.073 -0.106 1.087
{sq 6} -0.484 0.048 1.022
{squig 7} P -0.432 0.366 0.926
{sq 7} -0.54 0.353 0.883
{sq 7} -0.533 0.538 0.806
{sq 7} -0.287 0.452 0.955
{sq 7} -0.597 0.134 0.952
{squig 8} P -0.799 0.226 0.7
{sq 8} -0.829 0.113 0.705
{sq 8} -0.951 0.138 0.548
{sq 8} -0.804 0.385 0.636
{sq 8} -0.701 0.035 0.887
{squig 9} P -0.799 -0.226 0.7
{sq 9} -0.724 -0.283 0.77
{sq 9} -0.757 -0.452 0.668
{sq 9} -0.91 -0.214 0.57
{sq 9} -0.653 -0.113 0.917
{squig 10} P -0.432 -0.366 0.926
{sq 10} -0.371 -0.288 0.988
{sq 10} -0.219 -0.418 1.001
{sq 10} -0.458 -0.517 0.849
{sq 10} -0.518 -0.104 1.
{squig 11} P -0.226 0.7 0.799
{sq 11} -0.113 0.705 0.829
{sq 11} -0.138 0.548 0.951
{sq 11} -0.385 0.636 0.804
{sq 11} -0.035 0.887 0.701
{squig 12} P 0.226 0.7 0.799
{sq 12} 0.283 0.77 0.724
{sq 12} 0.452 0.668 0.757
{sq 12} 0.214 0.57 0.91
{sq 12} 0.113 0.917 0.653
{squig 13} P 0.366 0.926 0.432
{sq 13} 0.288 0.988 0.371
{sq 13} 0.418 1.001 0.219
{sq 13} 0.517 0.849 0.458
{sq 13} 0.104 1. 0.518
{squig 14} P 0. 1.066 0.206
{sq 14} -0.105 1.058 0.257
{sq 14} -0.194 1.086 0.081
{sq 14} 0.106 1.087 0.073
{sq 14} -0.049 1.021 0.484
{squig 15} P -0.366 0.926 0.432
{sq 15} -0.353 0.883 0.54
{sq 15} -0.538 0.806 0.533
{sq 15} -0.452 0.955 0.287
{sq 15} -0.134 0.952 0.597
{squig 16} P 0.7 0.799 0.226
{sq 16} 0.77 0.724 0.283
{sq 16} 0.668 0.757 0.452
{sq 16} 0.57 0.91 0.214
{sq 16} 0.917 0.653 0.113
{squig 17} P 0.926 0.432 0.366
{sq 17} 0.988 0.371 0.288
{sq 17} 1.001 0.219 0.418
{sq 17} 0.849 0.458 0.517
{sq 17} 1. 0.518 0.104
{squig 18} P 1.066 0.206 0.
{sq 18} 1.058 0.257 -0.105
{sq 18} 1.086 0.081 -0.194
{sq 18} 1.087 0.073 0.106
{sq 18} 1.022 0.484 -0.048
{squig 19} P 0.926 0.432 -0.366
{sq 19} 0.883 0.54 -0.353
{sq 19} 0.806 0.533 -0.538
{sq 19} 0.955 0.287 -0.452
{sq 19} 0.952 0.597 -0.134
{squig 20} P 0.7 0.799 -0.226
{sq 20} 0.705 0.829 -0.113
{sq 20} 0.548 0.951 -0.138
{sq 20} 0.636 0.804 -0.385
{sq 20} 0.887 0.701 -0.035
{squig 21} P 1.066 -0.206 0.
{sq 21} 1.058 -0.257 0.105
{sq 21} 1.086 -0.081 0.194
{sq 21} 1.087 -0.073 -0.106
{sq 21} 1.022 -0.484 0.048
{squig 22} P 0.926 -0.432 0.366
{sq 22} 0.883 -0.54 0.353
{sq 22} 0.806 -0.533 0.538
{sq 22} 0.955 -0.287 0.452
{sq 22} 0.952 -0.597 0.134
{squig 23} P 0.366 0.926 -0.432
{sq 23} 0.353 0.883 -0.54
{sq 23} 0.538 0.806 -0.533
{sq 23} 0.452 0.955 -0.287
{sq 23} 0.134 0.952 -0.597
{squig 24} P 0. 1.066 -0.206
{sq 24} 0.105 1.058 -0.257
{sq 24} 0.194 1.086 -0.081
{sq 24} -0.106 1.087 -0.073
{sq 24} 0.048 1.022 -0.484



@kinemage 1
@caption  (B&T Fig. 16.2, 16.3)
Symmetry of an icosahedron (seagreen) and a pentagonal dodecahedron (hotpink), related to cube (gray).  Animate, to step through a sequence that builds up and compares these figures.  View2 looks down a 2-fold axis, View3 down a 3-fold axis, and View5 down a 5-fold axis.
@onewidth 
@perspective 
@viewid {midpanel}
@zoom 0.94
@zslab 205
@center 0.0 0.0 0.0
@matrix
.846073 -.050131 .530704 -.276104 .805589 .524208 -.459187 -.5897 .66438
@2viewid {2-fold}
@2zslab 200
@2matrix
1.0 0 0  0 1.0 0  0 0 1.0
@3viewid {3-fold}
@3zoom 1.07
@3zslab 200
@3center 0.0 0.0 0.0
@3matrix 
.651985 -.493247 .575868 .105137 .810962 .575575 -.750907 -.31472 .580594
@4viewid {vs cube}
@4zoom 1.13
@4zslab 180
@4center 0.0 0.0 0.0
@4matrix 
.253724 -.030051 .96681 .005184 .999546 .029706 -.967263 -.002524 .253764
@5viewid {5-fold}
@5zoom 1.07
@5zslab 240
@5center 0.347 0.231 -0.066
@5matrix 
-.50029 -.16516 .84996 .80904 .260572 .526837 -.308488 .951223 .003259
@group {icos&dodec} dominant animate
@vectorlist {icos} color= sea 
{1, d, 0} P 1. 0.618 0.
{d, 0, 1} 0.618 0. 1.
{-d, 0, 1} -0.618 0. 1.
{-1, d, 0} -1. 0.618 0.
{-1,-d, 0} -1. -0.618 0.
{-d, 0,-1} -0.618 0. -1.
{d, 0,-1} 0.618 0. -1.
{1,-d, 0} 1. -0.618 0.
{1, d, 0} 1. 0.618 0.
{d, 0,-1} 0.618 0. -1.
{0, 1,-d} P 0. 1. -0.618
{0, 1, d} 0. 1. 0.618
{0, 1,-d} P 0. 1. -0.618
{-d, 0,-1} -0.618 0. -1.
{0,-1,-d} P 0. -1. -0.618
{0,-1, d} 0. -1. 0.618
{1,-d, 0} 1. -0.618 0.
{d, 0, 1} 0.618 0. 1.
{0,-1, d} 0. -1. 0.618
{-1,-d, 0} -1. -0.618 0.
{0,-1, -d} 0. -1. 0.618
{d, 0, -1} -0.618 0. 1.
{-1,-d, 0} P -1. -0.618 0.
{-d, 0, 1} -0.618 0. 1.
{0, 1, d} 0. 1. 0.618
{d, 0, 1} 0.618 0. 1.
{0,-1, d} 0. -1. 0.618
{-d, 0,-1} P -0.618 0. -1.
{-1, d, 0} -1. 0.618 0.
{0, 1,-d} 0. 1. -0.618
{-1, d, 0} P -1. 0.618 0.
{0, 1, d} 0. 1. 0.618
{1, d, 0} 1. 0.618 0.
{0, 1,-d} 0. 1. -0.618
{d, 0,-1} 0.618 0. -1.
{-d, 0,-1} P -0.618 0. -1.
{0,-1,-d} 0. -1. -0.618
{d, 0,-1} 0.618 0. -1.
{0,-1,-d} P 0. -1. -0.618
{1,-d, 0} 1. -0.618 0.
{-1,-d, 0} P -1. -0.618 0.
{0,-1,-d} 0. -1. -0.618
@vectorlist {dodec} color=hotpink
P 0. 0.42 1.099
0.679 0.679 0.679
0.42 1.099 0.
-0.42 1.099 0.
-0.679 0.679 0.679
0. 0.42 1.099
P 0.679 -0.679 -0.679
1.099 0. -0.42
0.679 0.679 -0.679
0. 0.42 -1.099
0. -0.42 -1.099
0.679 -0.679 -0.679
P 0. -0.42 1.099
0.679 -0.679 0.679
0.42 -1.099 0.
-0.42 -1.099 0.
-0.679 -0.679 0.679
0. -0.42 1.099
P 0.679 -0.679 0.679
1.099 0. 0.42
0.679 0.679 0.679
P 0. 0.42 1.099
0. -0.42 1.099
P 1.099 0. 0.42
1.099 0. -0.42
P 0.42 1.099 0.
0.679 0.679 -0.679
P 0.42 -1.099 0.
0.679 -0.679 -0.679
P -0.42 -1.099 0.
-0.679 -0.679 -0.679
0. -0.42 -1.099
P -0.679 -0.679 -0.679
-1.099 0. -0.42
-1.099 0. 0.42
-0.679 -0.679 0.679
P -1.099 0. -0.42
-0.679 0.679 -0.679
0. 0.42 -1.099
P -0.679 0.679 -0.679
-0.42 1.099 0.
P -0.679 0.679 0.679
-1.099 0. 0.42
@group {cube} dominant animate
@vectorlist {cube} color= gray 
{1,1,1} P 1. 1. 1.
{-1,1,1} -1. 1. 1.
{-1,-1,1} -1. -1. 1.
{1,-1,1} 1. -1. 1.
{1,1,1} 1. 1. 1.
{1,1,-1} 1. 1. -1.
{-1,1,-1} -1. 1. -1.
{-1,-1,-1} -1. -1. -1.
{1,-1,-1} 1. -1. -1.
{1,1,-1} 1. 1. -1.
{-1,1,1} P -1. 1. 1.
{-1,1,-1} -1. 1. -1.
{-1,-1,1} P -1. -1. 1.
{-1,-1,-1} -1. -1. -1.
{1,-1,1} P 1. -1. 1.
{1,-1,-1} 1. -1. -1.
@dotlist {spacers} off 
{spacer} P U 1.3 1.3 1.3
{spacer} P U -1.3 -1.3 -1.3
@vectorlist {ctr} color= gray master= {center}
{0,0,0} P 0. 0. 0.
{0,0,0} 0. 0. 0.
P U 0. 0. 0.05
U 0. 0. -0.05
P U 0. 0.05 0.
U 0. -0.05 0.
P U 0.05 0. 0.
U -0.05 0. 0.
@group {face edges} dominant animate
@vectorlist {cube1} instance= {cube}
@vectorlist {center} instance= {ctr} master= {center}
@vectorlist {icos edges} color=yellow 
{1,-d, 0} P 1. -0.618 0.
{1, d, 0} 1. 0.618 0.
{-1, d, 0} P -1. 0.618 0.
{-1,-d, 0} -1. -0.618 0.
{0, 1,-d} P 0. 1. -0.618
{0, 1, d} 0. 1. 0.618
{0,-1,-d} P 0. -1. -0.618
{0,-1, d} 0. -1. 0.618
{d, 0, 1} P 0.618 0. 1.
{-d, 0, 1} -0.618 0. 1.
{-d, 0,-1} P -0.618 0. -1.
{d, 0,-1} 0.618 0. -1.
@group {edges+icos} dominant animate
@vectorlist {cube1} instance= {cube}
@vectorlist {center} instance= {ctr} master= {center}
@vectorlist {icosahedron} instance= {icos}
@vectorlist {face edges} instance= {icos edges} 
@group {icosahedron} dominant animate
@vectorlist {cube1} instance= {cube}
@vectorlist {center} instance= {ctr} master= {center}
@vectorlist {icosahedron} instance= {icos}
@group {icos+dodec} dominant animate
@vectorlist off {cube1} instance= {cube}
@vectorlist off {center} instance= {ctr} master= {center}
@vectorlist {icosahedron} instance= {icos}
@vectorlist {dodecahed} instance= {dodec}

@kinemage 2
@caption  (B&T Fig. 16.4, 16.5)
T1 viral symmetry, related to the icosahedron (seagreen) and dodecahedron (hotpink), with symbols (yellowtint) to represent the positions of viral subunits.  The pink "T1 triangles" show how 60 identical objects can be packed together with icosahedral symmetry.
@onewidth
@perspective 
@viewid {midpanel}
@zoom 1.13
@zslab 250
@center 0.0 0.0 0.0
@matrix
.846073 -.050131 .530704 -.276104 .805589 .524208 -.459187 -.5897 .66438
@2viewid {2-fold}
@2zslab 250
@2matrix 
1.0 0 0  0 1.0 0  0 0 1.0
@3viewid {3-fold}
@3zoom 1.13
@3zslab 250
@3center 0.0 0.0 0.0
@3matrix 
.651985 -.493247 .575868 .105137 .810962 .575575 -.750907 -.31472 .580594
@4viewid {vs cube}
@4zoom 1.13
@4zslab 250
@4center 0.0 0.0 0.0
@4matrix
.253724 -.030051 .96681 .005184 .999546 .029706 -.967263 -.002524 .253764
@5viewid {5-fold}
@5zoom 1.2
@5zslab 250
@5center 0.347 0.231 -0.066
@5matrix 
-.50029 -.16516 .84996 .80904 .260572 .526837 -.308488 .951223 .003259




@group {center} dominant off 
@vectorlist {ctr} color= white 
{0,0,0} P 0. 0. 0.
{0,0,0} 0. 0. 0.
P U 0. 0. 0.05
U 0. 0. -0.05
P U 0. 0.05 0.
U 0. -0.05 0.
P U 0.05 0. 0.
U -0.05 0. 0.
@dotlist {spacers} off 
{spacer} P U 1.3 1.3 1.3
{spacer} P U -1.3 -1.3 -1.3
@group {icosahedron} dominant animate
@vectorlist {icosahedron} color= sea 
{1, d, 0} P 1. 0.618 0.
{d, 0, 1} 0.618 0. 1.
{-d, 0, 1} -0.618 0. 1.
{-1, d, 0} -1. 0.618 0.
{-1,-d, 0} -1. -0.618 0.
{-d, 0,-1} -0.618 0. -1.
{d, 0,-1} 0.618 0. -1.
{1,-d, 0} 1. -0.618 0.
{1, d, 0} 1. 0.618 0.
{d, 0,-1} 0.618 0. -1.
{0, 1,-d} P 0. 1. -0.618
{0, 1, d} 0. 1. 0.618
{0, 1,-d} P 0. 1. -0.618
{-d, 0,-1} -0.618 0. -1.
{0,-1,-d} P 0. -1. -0.618
{0,-1, d} 0. -1. 0.618
{1,-d, 0} 1. -0.618 0.
{d, 0, 1} 0.618 0. 1.
{0,-1, d} 0. -1. 0.618
{-1,-d, 0} -1. -0.618 0.
{0,-1, -d} 0. -1. 0.618
{d, 0, -1} -0.618 0. 1.
{-1,-d, 0} P -1. -0.618 0.
{-d, 0, 1} -0.618 0. 1.
{0, 1, d} 0. 1. 0.618
{d, 0, 1} 0.618 0. 1.
{0,-1, d} 0. -1. 0.618
{-d, 0,-1} P -0.618 0. -1.
{-1, d, 0} -1. 0.618 0.
{0, 1,-d} 0. 1. -0.618
{-1, d, 0} P -1. 0.618 0.
{0, 1, d} 0. 1. 0.618
{1, d, 0} 1. 0.618 0.
{0, 1,-d} 0. 1. -0.618
{d, 0,-1} 0.618 0. -1.
{-d, 0,-1} P -0.618 0. -1.
{0,-1,-d} 0. -1. -0.618
{d, 0,-1} 0.618 0. -1.
{0,-1,-d} P 0. -1. -0.618
{1,-d, 0} 1. -0.618 0.
{-1,-d, 0} P -1. -0.618 0.
{0,-1,-d} 0. -1. -0.618
@group {soccer ball} dominant animate
@vectorlist {pents} color=bluetint 
{soc bal} P 0.873 0.413 -0.332
{soc bal} 1. 0.209 0.
{soc bal} 0.873 0.413 0.332
{soc bal} 0.668 0.745 0.205
{soc bal} 0.668 0.745 -0.205
{soc bal} 0.873 0.413 -0.332
{soc bal} P 1. -0.208 0.
{soc bal} 0.873 -0.413 0.332
{soc bal} 0.668 -0.745 0.205
{soc bal} 0.668 -0.745 -0.205
{soc bal} 0.873 -0.413 -0.332
{soc bal} 1. -0.208 0.
{soc bal} P 0.745 0.205 -0.668
{soc bal} 0.745 -0.205 -0.668
{soc bal} 0.413 -0.332 -0.873
{soc bal} 0.208 0. -1.
{soc bal} 0.413 0.332 -0.873
{soc bal} 0.745 0.205 -0.668
{soc bal} P 0.745 0.205 0.668
{soc bal} 0.745 -0.205 0.668
{soc bal} 0.413 -0.332 0.873
{soc bal} 0.208 0. 1.
{soc bal} 0.413 0.332 0.873
{soc bal} 0.745 0.205 0.668
{soc bal} P 0.332 0.873 0.413
{soc bal} 0.205 0.668 0.745
{soc bal} -0.205 0.668 0.745
{soc bal} -0.332 0.873 0.413
{soc bal} 0. 1. 0.208
{soc bal} 0.332 0.873 0.413
{soc bal} P 0.332 0.873 -0.413
{soc bal} 0.205 0.668 -0.745
{soc bal} -0.205 0.668 -0.745
{soc bal} -0.332 0.873 -0.413
{soc bal} 0. 1. -0.208
{soc bal} 0.332 0.873 -0.413
{soc bal} P 0.332 -0.873 -0.413
{soc bal} 0.205 -0.668 -0.745
{soc bal} -0.205 -0.668 -0.745
{soc bal} -0.332 -0.873 -0.413
{soc bal} 0. -1. -0.208
{soc bal} 0.332 -0.873 -0.413
{soc bal} P 0.332 -0.873 0.413
{soc bal} 0. -1. 0.208
{soc bal} -0.332 -0.873 0.413
{soc bal} -0.205 -0.668 0.745
{soc bal} 0.205 -0.668 0.745
{soc bal} 0.332 -0.873 0.413
{soc bal} P -0.208 0. -1.
{soc bal} -0.413 0.332 -0.873
{soc bal} -0.745 0.205 -0.668
{soc bal} -0.745 -0.205 -0.668
{soc bal} -0.413 -0.332 -0.873
{soc bal} -0.208 0. -1.
{soc bal} P -0.873 0.413 -0.332
{soc bal} -1. 0.208 0.
{soc bal} -0.873 0.413 0.332
{soc bal} -0.668 0.745 0.205
{soc bal} -0.668 0.745 -0.205
{soc bal} -0.873 0.413 -0.332
{soc bal} P -0.208 0. 1.
{soc bal} -0.413 0.332 0.873
{soc bal} -0.745 0.205 0.668
{soc bal} -0.745 -0.205 0.668
{soc bal} -0.413 -0.332 0.873
{soc bal} -0.208 0. 1.
{soc bal} P -0.668 -0.745 0.205
{soc bal} -0.873 -0.413 0.332
{soc bal} -1. -0.208 0.
{soc bal} -0.873 -0.413 -0.332
{soc bal} -0.668 -0.745 -0.205
{soc bal} -0.668 -0.745 0.205
@vectorlist {hexes} color=bluetint 
{soc bal} P 0.873 0.413 0.332
{soc bal} 0.745 0.205 0.668
{soc bal} P 0.745 -0.205 0.668
{soc bal} 0.873 -0.413 0.332
{soc bal} P 1. -0.208 0.
{soc bal} 1. 0.209 0.
{soc bal} P 0.873 0.413 -0.332
{soc bal} 0.745 0.205 -0.668
{soc bal} P 0.745 -0.205 -0.668
{soc bal} 0.873 -0.413 -0.332
{soc bal} P 0.668 -0.745 -0.205
{soc bal} 0.332 -0.873 -0.413
{soc bal} P 0.205 -0.668 -0.745
{soc bal} 0.413 -0.332 -0.873
{soc bal} P 0.413 0.332 -0.873
{soc bal} 0.205 0.668 -0.745
{soc bal} P 0.208 0. -1.
{soc bal} -0.208 0. -1.
{soc bal} P -0.205 0.668 -0.745
{soc bal} -0.413 0.332 -0.873
{soc bal} P -0.205 -0.668 -0.745
{soc bal} -0.413 -0.332 -0.873
{soc bal} P -0.745 -0.205 -0.668
{soc bal} -0.873 -0.413 -0.332
{soc bal} P -0.332 -0.873 -0.413
{soc bal} -0.668 -0.745 -0.205
{soc bal} P 0. -1. -0.208
{soc bal} 0. -1. 0.208
{soc bal} P 0.668 -0.745 0.205
{soc bal} 0.332 -0.873 0.413
{soc bal} P -0.332 -0.873 0.413
{soc bal} -0.668 -0.745 0.205
{soc bal} P 0.205 -0.668 0.745
{soc bal} 0.413 -0.332 0.873
{soc bal} P -0.205 -0.668 0.745
{soc bal} -0.413 -0.332 0.873
{soc bal} P -0.745 -0.205 0.668
{soc bal} -0.873 -0.413 0.332
{soc bal} P -1. -0.208 0.
{soc bal} -1. 0.208 0.
{soc bal} P -0.745 0.205 -0.668
{soc bal} -0.873 0.413 -0.332
{soc bal} P -0.208 0. 1.
{soc bal} 0.208 0. 1.
{soc bal} P -0.413 0.332 0.873
{soc bal} -0.205 0.668 0.745
{soc bal} P 0.205 0.668 0.745
{soc bal} 0.413 0.332 0.873
{soc bal} P -0.873 0.413 0.332
{soc bal} -0.745 0.205 0.668
{soc bal} P -0.668 0.745 0.205
{soc bal} -0.332 0.873 0.413
{soc bal} P 0.332 0.873 0.413
{soc bal} 0.668 0.745 0.205
{soc bal} P 0. 1. 0.208
{soc bal} 0. 1. -0.208
{soc bal} P -0.668 0.745 -0.205
{soc bal} -0.332 0.873 -0.413
{soc bal} P 0.332 0.873 -0.413
{soc bal} 0.668 0.745 -0.205
@group {pent dodec} dominant  animate
@vectorlist {lines} color=hotpink
P 0. 0.42 1.099
0.679 0.679 0.679
0.42 1.099 0.
-0.42 1.099 0.
-0.679 0.679 0.679
0. 0.42 1.099
P 0.679 -0.679 -0.679
1.099 0. -0.42
0.679 0.679 -0.679
0. 0.42 -1.099
0. -0.42 -1.099
0.679 -0.679 -0.679
P 0. -0.42 1.099
0.679 -0.679 0.679
0.42 -1.099 0.
-0.42 -1.099 0.
-0.679 -0.679 0.679
0. -0.42 1.099
@vectorlist {others} color=hotpink
P 0.679 -0.679 0.679
1.099 0. 0.42
0.679 0.679 0.679
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@kinemage 3
@caption  (B&T Figs. 16.5a, 16.14a)
Satellite tobacco necrosis virus (STNV) subunits, on the T1 symmetry figure, with symmetry axes (cyan).  The pentagonal dodecahedron is shown in hotpink, and T1 triangles in pink.  The reference subunit has white Calpha backbone; a subunit related by a 5-fold operation is in bluetint, and a subunit related by a 3-fold in greentint; the latter two are related by a 2-fold operation.  (from PDB file 2STV)
@onewidth 
@zoom 1.38
@zslab 370
@center 7.585 94.497 36.415
@matrix
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@2viewid {3-fold vert}
@2zoom 1.26
@2zslab 200
@2center -0.315 45.239 4.699
@2matrix
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@3viewid {5-fold vert}
@3zoom 1.45
@3zslab 220
@3center 0.018 49.190 8.697
@3matrix
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@4viewid {tangent}
@4zoom 1.45
@4zslab 220
@4center -19.878 46.819 0.853
@4matrix
.012803 .430429 -.902534 -.319294 .857112 .404238 .947569 .283 .148407
@5viewid {whole ball}
@5zoom 0.8
@5zslab 200
@5center 5.347 42.312 27.433
@5matrix
.997027 .076741 .006962 -.007655 .008742 .999932 .076675 -.997013 .009304




@group {STNV}
@subgroup dominant {ref subunit}
@vectorlist {ca-ca} color= white 
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{ca arg 14}0.018 49.19 8.697
{ca ala 15}3.173 49.746 6.678
{ca val 16}1.565 51.646 3.816
{ca lys 17}0.185 54.139 6.304
{ca arg 18}3.723 55.098 7.268
{ca met 19}5.24 55.286 3.792
{ca ile 20}2.438 57.748 3.238
{ca asn 21}3.066 59.792 6.344
{ca thr 22}6.824 60.054 5.778
{ca his 23}5.928 61.966 2.612
{ca leu 24}3.553 64.418 4.257
{ca glu 25}4.916 67.39 6.143
{ca his 26}4.039 67.397 9.806
{ca lys 27}3.349 71.091 10.433
{ca arg 28}3.171 72.329 14.062
{ca phe 29}1.201 74.908 16.018
{ca ala 30}1.817 76.182 19.553
{ca leu 31}-0.297 78.442 21.708
{ca ile 32}-0.13 79.708 25.302
{ca asn 33}-2.912 81.233 27.434
{ca ser 34}-1.662 82.419 30.848
{ca gly 35}-3.01 84.289 33.897
{ca asn 36}-6.739 83.665 33.517
{ca thr 37}-9.225 83.762 36.291
{ca asn 38}-11.404 80.987 37.448
{ca ala 39}-14.991 81.299 36.291
{ca thr 40}-17.967 79.915 38.165
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{ca gly 42}-17.294 79.001 32.862
{ca thr 43}-15.65 80.011 29.634
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{ca asn 49}-8.729 78.09 15.543
{ca gly 50}-5.213 79.688 15.569
{ca ile 51}-4.237 77.575 12.541
{ca ile 52}-4.999 80.027 9.744
{ca gln 53}-4.47 79.912 6.005
{ca gly 54}-0.906 80.8 5.027
{ca asp 55}2.187 79.003 3.726
{ca asp 56}4.155 78.815 7.057
{ca ile 57}4.807 75.847 9.383
{ca asn 58}1.877 76.71 11.741
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{ca arg 60}-2.722 75.589 6.535
{ca ser 61}-3.79 75.235 2.98
{ca gly 62}-7.451 74.777 2.251
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{ca his 70}-2.085 67.234 20.192
{ca lys 71}-1.07 68.018 23.769
{ca leu 72}-2.785 70.14 26.417
{ca his 73}-1.241 71.557 29.6
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{ca arg 75}-2.292 74.679 35.585
{ca gly 76}-4.304 76.085 38.479
{ca thr 77}-3.195 78.255 41.391
{ca ala 78}-5.202 78.913 44.478
{ca ile 79}-5.489 82.49 45.576
{ca thr 80}-7.322 83.83 48.642
{ca val 81}-9.291 80.589 48.989
{ca ser 82}-8.902 76.936 48.314
{ca gln 83}-10.712 76.123 45.124
{ca thr 84}-11.408 73.82 42.276
{ca phe 85}-10.488 74.081 38.647
{ca arg 86}-12.146 72.012 35.985
{ca phe 87}-10.802 71.601 32.475
{ca ile 88}-12.82 69.905 29.756
{ca trp 89}-10.953 69.277 26.531
{ca phe 90}-13.43 68.516 23.746
{ca arg 91}-13.985 68.123 19.994
{ca asp 92}-17.007 69.822 18.375
{ca asn 93}-18.085 67.377 15.644
{ca met 94}-20.954 69.486 14.168
{ca asn 95}-19.547 73.108 14.502
{ca arg 96}-20.929 75.653 12.024
{ca gly 97}-18.822 78.765 12.901
{ca thr 98}-19.032 79.574 16.603
{ca thr 99}-17.491 79.062 19.978
{ca pro 100}-19.806 76.712 21.879
{ca thr 101}-21.284 78.03 25.073
{ca val 102}-20.981 76.321 28.459
{ca leu 103}-24.658 75.236 28.561
{ca glu 104}-24.097 73.29 25.345
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{ca asn 107}-26.26 70.513 31.927
{ca thr 108}-25.993 73.56 34.214
{ca ala 109}-23.295 76.23 34.572
{ca asn 110}-21.742 74.554 37.594
{ca phe 111}-18.325 72.934 37.997
{ca met 112}-19.885 69.752 39.589
{ca ser 113}-22.408 69.23 36.721
{ca gln 114}-22.693 66.265 34.36
{ca tyr 115}-22.877 66.725 30.586
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{ca pro 117}-27.958 65.014 27.958
{ca ile 118}-29.307 66.202 24.631
{ca thr 119}-26.036 67.297 23.057
{ca leu 120}-24.105 64.213 24.085
{ca gln 121}-26.85 61.901 22.824
{ca gln 122}-26.611 63.253 19.247
{ca lys 123}-22.791 63.419 19.749
{ca arg 124}-22.349 67.053 19.16
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{ca thr 126}-16.678 64.24 22.031
{ca ile 127}-15.113 64.689 25.416
{ca leu 128}-11.355 64.113 25.107
{ca lys 129}-10.435 64.774 28.722
{ca asp 130}-12.199 65.985 31.877
{ca val 131}-9.675 67.1 34.524
{ca thr 132}-10.445 68.468 38.007
{ca leu 133}-7.733 70.068 40.124
{ca asn 134}-8.228 70.903 43.741
{ca cys 135}-5.795 73.655 44.829
{ca ser 136}-5.487 74.139 48.569
{ca leu 137}-3.88 77.031 50.391
{ca thr 138}-2.933 74.752 53.281
{ca gly 139}-1.543 71.978 51.023
{ca glu 140}-0.622 71.968 47.296
{ca ser 141}-1.808 75.351 45.975
{ca ile 142}-0.367 74.704 42.518
{ca lys 143}-1.333 71.749 40.342
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{ca arg 145}-1.518 68.289 34.211
{ca ile 146}-0.32 67.329 30.718
{ca ile 147}-2.368 65.213 28.331
{ca asn 148}-1.258 63.903 24.917
{ca leu 149}-3.729 62.373 22.466
{ca pro 150}-3.944 61.201 18.875
{ca gly 151}-5.948 63.556 16.7
{ca gln 152}-8.473 63.668 13.938
{ca leu 153}-9.677 65.662 11.02
{ca val 154}-10.403 69.329 11.472
{ca asn 155}-12.605 71.277 9.129
{ca tyr 156}-12.654 75.054 8.896
{ca asn 157}-15.301 77.469 7.564
{ca gly 158}-12.986 80.447 7.12
{ca ala 159}-9.367 81.394 6.575
{ca thr 160}-8.74 83.601 9.621
{ca ala 161}-8.684 83.23 13.404
{ca val 162}-12.262 84.164 14.176
{ca ala 163}-15.085 82.1 15.604
{ca ala 164}-16.796 81.905 12.189
{ca ser 165}-13.801 79.899 10.92
{ca asn 166}-14.409 77.028 13.299
{ca gly 167}-15.643 73.873 11.767
{ca pro 168}-16.51 70.291 12.516
{ca gly 169}-13.597 68.77 14.388
{ca ala 170}-12.732 72.042 16.099
{ca ile 171}-10.889 71.593 19.366
{ca phe 172}-11.907 73.554 22.507
{ca met 173}-11.462 73.734 26.263
{ca leu 174}-14.071 74.54 28.857
{ca gln 175}-12.929 76.001 32.167
{ca ile 176}-15.231 76.168 35.176
{ca gly 177}-14.553 76.459 38.937
{ca asp 178}-16.137 77.46 42.282
{ca ser 179}-14.253 80.741 42.727
{ca leu 180}-13.36 83.763 40.562
{ca val 181}-10.108 84.623 42.208
{ca gly 182}-7.736 81.709 41.378
{ca leu 183}-5.547 81.762 38.24
{ca trp 184}-5.128 79.096 35.543
{ca asp 185}-2.678 78.76 32.668
{ca ser 186}-2.735 76.605 29.58
{ca ser 187}-0.691 75.674 26.558
{ca tyr 188}-1.515 73.613 23.512
{ca glu 189}0.329 72.009 20.641
{ca ala 190}-0.877 70.285 17.533
{ca val 191}1.039 68.255 14.992
{ca tyr 192}-0.862 67.873 11.76
{ca thr 193}-0.566 67.002 8.115
{ca asp 194}-1.918 69.253 5.434
{ca ala 195}-1.71 67.199 2.253
@subgroup dominant {5-fold sub} 
@localrotation
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{ca met 13}-2.253 48.386 5.762
{ca arg 14}0.018 49.19 8.697
{ca ala 15}3.173 49.746 6.678
{ca val 16}1.565 51.646 3.816
{ca lys 17}0.185 54.139 6.304
{ca arg 18}3.723 55.098 7.268
{ca met 19}5.24 55.286 3.792
{ca ile 20}2.438 57.748 3.238
{ca asn 21}3.066 59.792 6.344
{ca thr 22}6.824 60.054 5.778
{ca his 23}5.928 61.966 2.612
{ca leu 24}3.553 64.418 4.257
{ca glu 25}4.916 67.39 6.143
{ca his 26}4.039 67.397 9.806
{ca lys 27}3.349 71.091 10.433
{ca arg 28}3.171 72.329 14.062
{ca phe 29}1.201 74.908 16.018
{ca ala 30}1.817 76.182 19.553
{ca leu 31}-0.297 78.442 21.708
{ca ile 32}-0.13 79.708 25.302
{ca asn 33}-2.912 81.233 27.434
{ca ser 34}-1.662 82.419 30.848
{ca gly 35}-3.01 84.289 33.897
{ca asn 36}-6.739 83.665 33.517
{ca thr 37}-9.225 83.762 36.291
{ca asn 38}-11.404 80.987 37.448
{ca ala 39}-14.991 81.299 36.291
{ca thr 40}-17.967 79.915 38.165
{ca ala 41}-20.135 80.283 35.007
{ca gly 42}-17.294 79.001 32.862
{ca thr 43}-15.65 80.011 29.634
{ca val 44}-14.786 78.193 26.447
{ca gln 45}-11.403 78.699 24.827
{ca asn 46}-10.274 78.119 21.273
{ca leu 47}-7.307 75.873 20.614
{ca ser 48}-7.253 74.818 16.891
{ca asn 49}-8.729 78.09 15.543
{ca gly 50}-5.213 79.688 15.569
{ca ile 51}-4.237 77.575 12.541
{ca ile 52}-4.999 80.027 9.744
{ca gln 53}-4.47 79.912 6.005
{ca gly 54}-0.906 80.8 5.027
{ca asp 55}2.187 79.003 3.726
{ca asp 56}4.155 78.815 7.057
{ca ile 57}4.807 75.847 9.383
{ca asn 58}1.877 76.71 11.741
{ca gln 59}-0.603 77.494 9.005
{ca arg 60}-2.722 75.589 6.535
{ca ser 61}-3.79 75.235 2.98
{ca gly 62}-7.451 74.777 2.251
{ca asp 63}-10.009 74.201 5.002
{ca gln 64}-8.863 70.847 6.267
{ca val 65}-6.054 69.519 8.371
{ca arg 66}-5.286 66.298 10.1
{ca ile 67}-4.033 66.474 13.635
{ca val 68}-1.712 63.547 14.193
{ca ser 69}-1.354 64.352 17.868
{ca his 70}-2.085 67.234 20.192
{ca lys 71}-1.07 68.018 23.769
{ca leu 72}-2.785 70.14 26.417
{ca his 73}-1.241 71.557 29.6
{ca val 74}-3.445 72.999 32.358
{ca arg 75}-2.292 74.679 35.585
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{ 3-fold} .002 90. -0.007

@kinemage 4
@caption (B&T Fig. 16.8a)
Animation of the conformational difference between TBSV subunits A (pink) vs C (seagreen), which allow them to pack differently into the non-equivalent T3 positions.  The s domains were superimposed, showing that the p domains change position around a hinge, and the N-terminal arm becomes ordered in the C subunit.  (from PDB file 2TBV)
@onewidth 
@zoom 1.0
@zslab 170
@center -11.089 45.833 135.393
@matrix
-.691612 -.604514 .395266 .568575 -.118193 .814096 -.445415 .787778 .425455
@2viewid {outside}
@2zoom 1.0
@2zslab 150
@2center -11.089 45.833 135.393
@2matrix
-.555205 .419706 -.718048 -.802631 -.496678 .330293 -.218012 .759709 .612628
@group dominant {TBSV sub A} animate
@vectorlist {ca-ca} color= pink master= {s domain} 
{ca gly a 102}P -21.641 31.009 115.737
{ca val a 103}-18.437 33.087 115.87
{ca thr a 104}-18.938 36.68 116.696
{ca val a 105}-16.748 39.674 115.814
{ca thr a 106}-16.686 42.827 117.842
{ca ser a 107}-14.737 46.021 116.914
{ca his a 108}-15.533 48.704 119.454
{ca arg a 109}-13.992 51.578 121.452
{ca glu a 110}-14.261 51.327 125.244
{ca tyr a 111}-13.126 54.002 127.762
{ca leu a 112}-10.432 53.001 130.275
{ca thr a 113}-9.069 55.394 132.942
{ca gln a 114}-8.37 59.049 133.786
{ca val a 115}-4.526 59.556 134.281
{ca asn a 116}-3.549 61.719 137.207
{ca asn a 117}0.079 63.021 137.586
{ca ser a 118}2.903 62.383 139.994
{ca ser a 119}6.235 64.076 140.646
{ca gly a 120}7.313 60.702 141.708
{ca phe a 121}6.969 57.748 139.332
{ca val a 122}3.569 56.099 139.04
{ca val a 123}2.121 53.282 136.939
{ca asn a 124}-1.502 51.956 136.457
{ca gly a 125}-2.533 53.89 139.473
{ca gly a 126}0.77 53.427 141.28
{ca ile a 127}-1.077 50.237 141.461
{ca val a 128}-0.008 46.816 141.611
{ca gly a 129}-0.467 43.169 140.643
{ca asn a 130}-0.575 43.282 136.853
{ca ser a 131}-3.961 45. 137.008
{ca leu a 132}-4.465 45.767 133.403
{ca gln a 133}-3.99 42.376 131.653
{ca leu a 134}-5.326 42.386 128.092
{ca asn a 135}-7.802 39.512 128.203
{ca pro a 136}-11.481 40.336 127.9
{ca ser a 137}-12.271 39.915 130.934
{ca asn a 138}-10.54 42.064 132.853
{ca gly a 139}-13.795 43.455 134.231
{ca thr a 140}-11.089 45.833 135.393
{ca leu a 141}-10.004 46.934 131.935
{ca phe a 142}-12.916 46.294 129.535
{ca ser a 143}-16.097 47.849 130.899
{ca trp a 144}-18.149 46.931 127.836
{ca leu a 145}-16.765 43.736 126.372
{ca pro a 146}-17.223 42.313 129.875
{ca ala a 147}-20.546 40.537 129.45
{ca leu a 148}-20.363 39.534 125.79
{ca ala a 149}-17.291 37.276 125.906
{ca ser a 150}-18.751 35.798 129.087
{ca asn a 151}-20.891 33.713 126.749
{ca phe a 152}-17.655 32.486 125.178
{ca asp a 153}-14.466 30.518 125.752
{ca gln a 154}-11.76 31.433 123.285
{ca tyr a 155}-10.817 35.007 122.507
{ca ser a 156}-8.699 36.535 119.763
{ca phe a 157}-8.117 40.134 118.85
{ca asn a 158}-7.211 41.632 115.48
{ca ser a 159}-6.71 45.272 116.446
{ca val a 160}-6.196 46.942 119.795
{ca val a 161}-4.9 50.505 119.857
{ca leu a 162}-4.326 52.729 122.887
{ca asp a 163}-5.715 56.226 122.393
{ca tyr a 164}-4.56 59.161 124.519
{ca val a 165}-6.546 62.397 124.416
{ca pro a 166}-5.959 65.215 126.898
{ca leu a 167}-8.156 67.248 129.238
{ca cys a 168}-5.302 69.354 130.604
{ca gly a 169}-3.534 72.338 129.054
{ca thr a 170}-0.337 73.233 127.213
{ca thr a 171}1.299 74.344 130.457
{ca glu a 172}0.993 71.149 132.861
{ca val a 173}4.472 69.705 133.374
{ca gly a 174}4.816 65.933 133.128
{ca arg a 175}4.988 62.607 131.296
{ca val a 176}2.35 60.082 130.325
{ca ala a 177}3.463 56.782 128.813
{ca leu a 178}1.749 53.727 127.341
{ca tyr a 179}3.526 50.402 126.868
{ca phe a 180}3.122 46.696 126.121
{ca asp a 181}4.505 43.643 127.911
{ca lys a 182}3.906 40.267 126.249
{ca asp a 183}4.109 38.588 129.586
{ca ser a 184}0.788 39.174 131.311
{ca gln a 185}2.802 38.303 134.405
{ca asp a 186}6.161 40.072 134.583
{ca pro a 187}6.046 42.716 137.3
{ca glu a 188}5.861 46.46 136.755
{ca pro a 189}8. 49.43 135.751
{ca ala a 190}10.506 50.521 138.385
{ca asp a 191}11.898 53.774 136.978
{ca arg a 192}12.65 55.983 133.987
{ca val a 193}15.25 53.798 132.28
{ca glu a 194}13.054 50.702 132.517
{ca leu a 195}9.842 52.084 131.075
{ca ala a 196}11.719 53.311 128.013
{ca asn a 197}13.263 49.969 127.071
{ca phe a 198}10.024 48.247 126.137
{ca gly a 199}9.408 47.331 122.508
{ca val a 200}5.896 48.74 122.19
{ca leu a 201}6.08 52.047 124.085
{ca lys a 202}5.09 55.677 123.587
{ca glu a 203}6.527 58.746 125.302
{ca thr a 204}4.381 61.881 125.39
{ca ala a 205}4.063 65.093 127.338
{ca pro a 206}0.666 65.17 129.031
{ca trp a 207}-0.89 68.024 127.065
{ca ala a 208}0.019 66.489 123.711
{ca glu a 209}-1.94 63.824 121.893
{ca ala a 210}-0.75 60.24 121.662
{ca met a 211}-1.116 56.814 120.227
{ca leu a 212}-0.295 53.131 120.591
{ca arg a 213}-1.136 50.051 118.529
{ca ile a 214}-0.759 46.542 119.91
{ca pro a 215}0.947 43.442 118.544
{ca thr a 216}-1.757 40.795 118.21
{ca asp a 217}-1.098 37.157 117.4
{ca lys a 218}-3.961 34.891 116.356
{ca val a 219}-3.302 32.148 118.899
{ca lys a 220}-6.286 30.398 120.429
{ca arg a 221}-6.227 31.772 123.807
{ca tyr a 222}-8.538 31.081 126.744
{ca cys a 223}-10.736 33.36 128.84
{ca asn a 224}-10.831 33.233 132.633
{ca asp a 225}-13.825 31.125 133.636
{ca ser a 226}-11.909 28.339 135.121
{ca ala a 227}-8.753 29.465 136.781
{ca thr a 228}-5.294 29.317 135.619
{ca val a 229}-2.281 30.476 137.626
{ca asp a 230}-0.032 30.895 134.593
{ca gln a 231}-2.01 33.954 133.512
{ca lys a 232}0.673 34.334 130.873
{ca leu a 233}-0.075 31.336 128.68
{ca ile a 234}-3.672 32.549 128.376
{ca asp a 235}-3.41 36.342 128.385
{ca leu a 236}-2.556 38.32 125.257
{ca gly a 237}-0.515 41.09 126.891
{ca gln a 238}-0.053 43.427 129.855
{ca leu a 239}-0.883 47.219 129.345
{ca gly a 240}1.053 50.038 130.994
{ca ile a 241}0.413 53.735 131.565
{ca ala a 242}3.154 55.582 133.429
{ca thr a 243}3.638 59.198 134.525
{ca tyr a 244}6.734 60.743 136.013
{ca gly a 245}8.077 64.246 136.576
{ca gly a 246}4.816 66.037 137.351
{ca ala a 247}4.123 68.686 139.921
{ca gly a 248}0.851 67.371 141.339
{ca ala a 249}-1.178 64.17 141.135
{ca asp a 250}-4.031 65.858 139.291
{ca ala a 251}-5.65 64.897 135.994
{ca val a 252}-4.288 65.578 132.52
{ca gly a 253}-5.364 62.523 130.545
{ca glu a 254}-8.157 60.072 129.772
{ca leu a 255}-7.168 57.106 127.667
{ca phe a 256}-9.331 54.896 125.458
{ca leu a 257}-9.501 51.36 124.05
{ca ala a 258}-9.75 50.516 120.346
{ca arg a 259}-11.194 47.035 120.032
{ca ser a 260}-11.471 44.15 117.583
{ca val a 261}-12.281 40.701 118.95
{ca thr a 262}-13.227 37.25 117.685
{ca leu a 263}-15.456 35.238 120.003
{ca tyr a 264}-15.617 31.466 119.614
{ca phe a 265}-17.282 28.475 121.244
{ca pro a 266}-20.329 29.714 123.144
{ca gln a 267}-22.125 28.135 126.151
{ca pro a 268}-22.822 30.125 129.312
{ca thr a 269}-22.471 33.848 129.945
{ca asn a 270}-20.071 33.779 132.914
{ca thr a 271}-21.486 35.879 135.739
{ca leu a 272}-21.736 39.598 134.999
{ca leu a 273}-22.621 39.395 138.689
{ca ser a 274}-20.555 39.44 141.63
@vectorlist {ca-ca} color= pinktint master= {p domain} 
{ca ser a 274}P -20.555 39.44 141.63
{ca ser a 275}-20.767 37.604 144.685
{ca lys a 276}-18.297 38.397 147.489
{ca arg a 277}-18.145 36.724 150.868
{ca leu a 278}-16.147 37.783 153.903
{ca asp a 279}-15.584 34.902 156.435
{ca leu a 280}-17.231 35.662 159.94
{ca thr a 281}-14.048 36.816 161.668
{ca gly a 282}-12.257 35.987 158.45
{ca ser a 283}-10.763 36.919 155.332
{ca leu a 284}-12.601 35.485 152.404
{ca ala a 285}-15.36 32.968 151.514
{ca asp a 286}-16.253 32.375 147.866
{ca ala a 287}-15.979 34.179 144.697
{ca thr a 288}-17.797 34.217 141.33
{ca gly a 289}-16.629 37.488 139.803
{ca pro a 290}-15.662 38.885 137.648
{ca gly a 291}-14.048 41.154 140.228
{ca tyr a 292}-14.9 44.846 140.424
{ca leu a 293}-14.761 44.931 144.159
{ca val a 294}-12.812 43.718 147.128
{ca leu a 295}-14.641 43.516 150.405
{ca thr a 296}-12.575 43.428 153.203
{ca arg a 297}-13.403 44.008 156.803
{ca thr a 298}-11.391 45.631 159.575
{ca pro a 299}-12.574 44.608 163.032
{ca thr a 300}-15.221 47.488 162.975
{ca val a 301}-15.779 48.454 159.547
{ca leu a 302}-15.903 47.418 155.956
{ca thr a 303}-13.952 48.259 152.884
{ca his a 304}-15.42 48.352 149.387
{ca thr a 305}-12.476 49.054 147.193
{ca phe a 306}-13.206 49.755 143.533
{ca arg a 307}-11.251 48.398 140.571
{ca ala a 308}-13.977 49.118 138.087
{ca thr a 309}-15.656 52.38 137.001
{ca gly a 310}-19.307 53.369 136.275
{ca thr a 311}-22.798 52.976 137.675
{ca phe a 312}-23.074 49.818 139.753
{ca asn a 313}-25.605 48.105 141.886
{ca leu a 314}-24.82 47.039 145.2
{ca ser a 315}-26.788 44.474 147.114
{ca gly a 316}-26.304 43.039 150.451
{ca gly a 317}-25.957 43.736 154.186
{ca leu a 318}-23.756 42.153 156.912
{ca arg a 319}-23.126 41.215 160.533
{ca cys a 320}-22.709 44.106 163.054
{ca leu a 321}-24.761 45.696 165.682
{ca thr a 322}-24.697 49.242 165.126
{ca ser a 323}-26.455 51.593 162.743
{ca leu a 324}-24.658 52.151 159.318
{ca thr a 325}-22.785 55.411 158.52
{ca leu a 326}-22.195 55.589 154.834
{ca gly a 327}-18.818 57.137 153.933
{ca ala a 328}-16.838 56.83 150.84
{ca thr a 329}-13.755 58.289 149.187
{ca gly a 330}-12.57 59.619 145.83
{ca ala a 331}-14.389 59.789 142.474
{ca val a 332}-17.89 58.997 143.735
{ca val a 333}-21.492 59.915 142.978
{ca ile a 334}-23.779 58.219 145.505
{ca asn a 335}-27.117 57.314 143.947
{ca asp a 336}-29.241 55.333 146.389
{ca ile a 337}-28.178 54.317 149.893
{ca leu a 338}-30.718 52.172 151.717
{ca ala a 339}-29.765 50.803 154.954
{ca ile a 340}-32.004 48.492 156.977
{ca asp a 341}-30.656 47.598 160.44
{ca asn a 342}-31.953 45.661 163.427
{ca val a 343}-29.287 46.671 165.919
{ca gly a 344}-27.948 43.783 167.992
{ca thr a 345}-28.002 41.711 164.821
{ca ala a 346}-26.612 41.898 161.436
{ca ser a 347}-27.829 44.187 158.704
{ca asp a 348}-28.583 44.791 155.026
{ca tyr a 349}-27.528 47.468 152.588
{ca phe a 350}-28.691 48.104 149.084
{ca leu a 351}-27.106 51.169 147.499
{ca asn a 352}-26.464 52.349 143.879
{ca cys a 353}-23.416 54.568 143.44
{ca thr a 354}-21.315 55.692 140.52
{ca val a 355}-17.537 55.693 140.365
{ca ser a 356}-15.227 57.533 137.812
{ca ser a 357}-11.876 57.253 139.214
{ca leu a 358}-9.23 55.353 141.129
{ca pro a 359}-9.121 55.983 143.798
{ca ala a 360}-12.805 55.385 144.327
{ca thr a 361}-13.3 53.929 147.813
{ca val a 362}-16.372 53.115 149.798
{ca thr a 363}-16.703 51.958 153.358
{ca phe a 364}-19.636 51.26 155.748
{ca thr a 365}-19.12 52.266 159.335
{ca val a 366}-20.37 49.763 161.984
{ca ser a 367}-19.193 47.686 164.705
{ca gly a 368}-18.311 44.096 165.139
{ca val a 369}-18.058 43.104 161.571
{ca ala a 370}-18.491 39.384 162.092
{ca ala a 371}-19.673 38.442 158.611
{ca gly a 372}-19.459 40.265 155.29
{ca ile a 373}-21.554 39.347 152.263
{ca leu a 374}-22.276 41.238 149.067
{ca leu a 375}-23.144 41.113 145.384
{ca val a 376}-22.199 43.51 142.569
{ca gly a 377}-23.455 43.579 139.068
{ca arg a 378}-23.197 46.79 137.07
{ca ala a 379}-26.342 48.881 136.828
{ca arg a 380}-27.741 52.155 135.632
{ca ala a 381}-29.11 55.198 137.439
{ca asn a 382}-31.484 52.605 138.843
{ca val a 383}-33.57 52.912 142.
{ca val a 384}-32.521 50.903 145.048
{ca asn a 385}-34.732 52.519 147.683
{ca leu a 386}-38.205 52.259 149.201
{ca leu a 387}-41.066 54.755 149.071
@group dominant {TBSV sub C} animate
@vectorlist {ca-ca} color=sea master= {N-t arm}
{ca ile c 68}P -6.028 81.903 110.833
{ca thr c 69}-3.496 84.705 110.935
{ca his c 70}-1.096 83.506 113.616
{ca val c 71}1.672 86.008 114.275
{ca gly c 72}5.483 85.949 114.193
{ca gly c 73}5.401 83.051 111.768
{ca val c 74}6.996 82.799 108.347
{ca gly c 75}5.896 79.647 106.527
{ca gly c 76}8.045 76.901 108.039
{ca ser c 77}7.939 77.853 111.559
{ca ile c 78}6.527 76.348 114.826
{ca met c 79}3.431 77.197 116.958
{ca ala c 80}3.13 75.864 120.49
{ca pro c 81}-0.44 76.856 121.426
{ca val c 82}-2.092 77.644 124.695
{ca ala c 83}-4.286 74.563 124.445
{ca val c 84}-5.34 71.527 122.666
{ca ser c 85}-8.091 69.15 123.003
{ca arg c 86}-9.848 66.449 120.564
{ca gln c 87}-13.604 65.911 120.601
{ca leu c 88}-14.868 62.447 121.377
{ca val c 89}-18.191 60.869 120.391
{ca gly c 90}-20.656 58.019 120.687
{ca ser c 91}-18.874 54.774 120.001
{ca lys c 92}-21.754 52.519 119.079
{ca pro c 93}-20.513 48.977 118.553
{ca lys c 94}-20.522 46.849 115.535
{ca phe c 95}-20.883 43.051 115.641
{ca thr c 96}-19.83 41.222 112.515
{ca gly c 97}-21.364 37.835 111.712
{ca arg c 98}-18.322 35.714 110.81
{ca thr c 99}-20.989 33.12 110.125
{ca ser c 100}-18.608 30.642 111.799
{ca gly c 101}-18.985 27.728 114.164
{ca gly c 102}-21.84 30.27 114.206
@vectorlist {ca-ca} color=sea master= {s domain}
{ca gly c 102}P -21.84 30.27 114.206
{ca val c 103}-19.498 32.403 116.344
{ca thr c 104}-19.325 36.076 116.742
{ca val c 105}-17.012 39.225 116.324
{ca thr c 106}-17.166 42.471 118.112
{ca ser c 107}-15.451 45.88 117.478
{ca his c 108}-16.324 48.753 119.751
{ca arg c 109}-14.512 51.487 121.668
{ca glu c 110}-14.246 51.129 125.443
{ca tyr c 111}-12.736 53.922 127.614
{ca leu c 112}-10.16 52.868 130.223
{ca thr c 113}-8.896 55.348 132.847
{ca gln c 114}-8.173 59.012 133.589
{ca val c 115}-4.403 59.466 133.697
{ca asn c 116}-3.649 61.633 136.671
{ca asn c 117}-0.056 63.014 137.189
{ca ser c 118}2.868 61.726 139.25
{ca ser c 119}5.776 64.071 139.939
{ca gly c 120}7.316 60.954 141.435
{ca phe c 121}6.981 57.786 139.354
{ca val c 122}3.66 56.02 139.051
{ca val c 123}1.991 53.362 136.92
{ca asn c 124}-1.704 52.474 136.567
{ca gly c 125}-2.487 54.392 139.739
{ca gly c 126}0.526 53.046 141.61
{ca ile c 127}-1.55 49.928 141.27
{ca val c 128}0.075 46.722 141.38
{ca gly c 129}-0.75 43.147 140.395
{ca asn c 130}-0.731 43.684 136.632
{ca ser c 131}-4.394 44.65 136.323
{ca leu c 132}-4.47 46.133 133.149
{ca gln c 133}-4.236 42.593 131.733
{ca leu c 134}-5.546 42.354 128.176
{ca asn c 135}-7.943 39.418 128.348
{ca pro c 136}-11.636 40.167 127.977
{ca ser c 137}-12.54 40.011 131.003
{ca asn c 138}-10.633 42.064 132.853
{ca gly c 139}-13.826 43.579 134.23
{ca thr c 140}-10.957 45.595 135.645
{ca leu c 141}-10.085 46.818 132.163
{ca phe c 142}-12.993 46.397 129.714
{ca ser c 143}-16.225 47.967 130.923
{ca trp c 144}-18.497 46.769 128.124
{ca leu c 145}-16.972 43.567 126.763
{ca pro c 146}-17.578 42.428 130.324
{ca ala c 147}-20.581 40.316 129.373
{ca leu c 148}-20.344 38.929 125.85
{ca ala c 149}-17.022 37.057 125.734
{ca ser c 150}-19.111 35.838 128.625
{ca asn c 151}-21.216 33.492 126.336
{ca phe c 152}-17.845 32.466 124.912
{ca asp c 153}-14.615 30.61 125.628
{ca gln c 154}-11.838 31.586 123.222
{ca tyr c 155}-10.865 35.154 122.449
{ca ser c 156}-8.721 36.666 119.717
{ca phe c 157}-8.108 40.261 118.807
{ca asn c 158}-7.173 41.753 115.442
{ca ser c 159}-6.652 45.388 116.411
{ca val c 160}-6.144 47.054 119.762
{ca val c 161}-4.822 50.608 119.832
{ca leu c 162}-4.248 52.828 122.865
{ca asp c 163}-5.612 56.339 122.409
{ca tyr c 164}-4.442 59.24 124.573
{ca val c 165}-6.406 62.491 124.504
{ca pro c 166}-5.806 65.274 127.021
{ca leu c 167}-7.961 67.307 129.397
{ca cys c 168}-5.068 69.442 130.626
{ca gly c 169}-3.258 72.382 129.041
{ca thr c 170}-0.044 73.257 127.227
{ca thr c 171}1.546 74.38 130.483
{ca glu c 172}1.199 71.388 132.789
{ca val c 173}4.681 69.97 133.295
{ca gly c 174}5.085 66.198 133.12
{ca arg c 175}5.318 62.827 131.385
{ca val c 176}2.749 60.184 130.494
{ca ala c 177}3.674 56.881 128.859
{ca leu c 178}1.961 53.882 127.278
{ca tyr c 179}3.627 50.489 126.897
{ca phe c 180}3.14 46.783 126.207
{ca asp c 181}4.483 43.655 127.895
{ca lys c 182}3.885 40.308 126.208
{ca asp c 183}4.047 38.627 129.609
{ca ser c 184}0.722 39.238 131.316
{ca gln c 185}2.707 38.347 134.423
{ca asp c 186}6.112 40.026 134.584
{ca pro c 187}5.959 42.702 137.267
{ca glu c 188}5.807 46.457 136.793
{ca pro c 189}7.985 49.403 135.8
{ca ala c 190}10.514 50.477 138.417
{ca asp c 191}11.888 53.751 137.039
{ca arg c 192}12.699 55.955 134.06
{ca val c 193}15.282 53.755 132.363
{ca glu c 194}13.062 50.675 132.589
{ca leu c 195}9.868 52.08 131.129
{ca ala c 196}11.771 53.294 128.078
{ca asn c 197}13.296 49.941 127.144
{ca phe c 198}10.05 48.243 126.193
{ca gly c 199}9.447 47.331 122.56
{ca val c 200}5.948 48.765 122.223
{ca leu c 201}6.146 52.071 124.119
{ca lys c 202}5.182 55.708 123.615
{ca glu c 203}6.573 58.792 125.337
{ca thr c 204}4.483 61.961 125.523
{ca ala c 205}4.544 65.212 127.429
{ca pro c 206}1.046 65.102 128.902
{ca trp c 207}-0.642 68.014 127.139
{ca ala c 208}0.169 66.629 123.695
{ca glu c 209}-1.809 63.994 121.871
{ca ala c 210}-0.67 60.393 121.652
{ca met c 211}-0.995 56.89 120.222
{ca leu c 212}-0.203 53.201 120.59
{ca arg c 213}-1.055 50.127 118.524
{ca ile c 214}-0.711 46.616 119.908
{ca pro c 215}0.98 43.504 118.55
{ca thr c 216}-1.74 40.876 118.202
{ca asp c 217}-1.053 37.295 117.407
{ca lys c 218}-3.977 34.989 116.336
{ca val c 219}-3.352 32.241 118.882
{ca lys c 220}-6.356 30.512 120.397
{ca arg c 221}-6.306 31.885 123.774
{ca tyr c 222}-8.637 31.212 126.699
{ca cys c 223}-10.84 33.507 128.775
{ca asn c 224}-10.816 33.322 132.779
{ca asp c 225}-13.951 31.286 133.443
{ca ser c 226}-12.142 28.43 134.953
{ca ala c 227}-9.091 29.593 136.779
{ca thr c 228}-5.588 29.509 135.752
{ca val c 229}-2.394 30.561 137.622
{ca asp c 230}-0.19 30.998 134.61
{ca gln c 231}-2.048 34.136 133.542
{ca lys c 232}0.652 34.43 130.911
{ca leu c 233}-0.125 31.419 128.748
{ca ile c 234}-3.709 32.663 128.427
{ca asp c 235}-3.485 36.458 128.375
{ca leu c 236}-2.589 38.412 125.244
{ca gly c 237}-0.541 41.131 126.95
{ca gln c 238}0.083 43.547 129.819
{ca leu c 239}-0.879 47.307 129.308
{ca gly c 240}1.04 50.122 130.981
{ca ile c 241}0.43 53.826 131.544
{ca ala c 242}3.178 55.648 133.42
{ca thr c 243}3.698 59.239 134.545
{ca tyr c 244}6.797 60.761 136.049
{ca gly c 245}8.163 64.254 136.62
{ca gly c 246}4.91 66.068 137.377
{ca ala c 247}4.223 68.722 139.943
{ca gly c 248}0.934 67.431 141.343
{ca ala c 249}-1.117 64.244 141.129
{ca asp c 250}-3.779 65.955 139.374
{ca ala c 251}-5.556 65.003 135.963
{ca val c 252}-4.17 65.676 132.497
{ca gly c 253}-5.257 62.629 130.516
{ca glu c 254}-8.064 60.198 129.728
{ca leu c 255}-7.084 57.225 127.629
{ca phe c 256}-9.251 55.031 125.408
{ca leu c 257}-9.439 51.496 123.999
{ca ala c 258}-9.676 50.66 120.293
{ca arg c 259}-11.316 47.258 120.101
{ca ser c 260}-11.664 44.309 117.738
{ca val c 261}-12.324 40.69 119.036
{ca thr c 262}-13.138 37.27 117.607
{ca leu c 263}-15.477 35.438 119.864
{ca tyr c 264}-15.344 31.437 119.454
{ca phe c 265}-16.926 28.299 120.88
{ca pro c 266}-19.888 30.035 122.508
{ca gln c 267}-21. 28.505 125.852
{ca pro c 268}-23.655 28.395 128.58
{ca thr c 269}-22.999 31.867 129.977
{ca asn c 270}-20.491 32.188 132.815
{ca thr c 271}-21.264 34.032 136.045
{ca leu c 272}-19.316 37.172 136.9
{ca leu c 273}-19.384 36.769 140.677
{ca sser c 274}-16.473 37.292 143.063
@vectorlist {ca-ca} color=greentint master= {p domain}
{ca sser c 274}P -16.473 37.292 143.063
{ca ser c 275}-15.363 34.821 145.668
{ca lys c 276}-12.409 35.774 147.895
{ca arg c 277}-11.04 33.752 150.773
{ca leu c 278}-8.518 34.828 153.382
{ca asp c 279}-6.772 31.841 155.132
{ca leu c 280}-7.512 31.751 159.008
{ca thr c 281}-4.244 33.353 160.104
{ca gly c 282}-3.277 33.37 156.456
{ca ser c 283}-2.885 35.01 153.296
{ca leu c 284}-5.159 33.595 150.682
{ca ala c 285}-7.549 30.662 150.031
{ca asp c 286}-9.28 30.364 146.66
{ca ala c 287}-10.212 32.58 143.904
{ca thr c 288}-12.854 32.648 141.136
{ca gly c 289}-12.762 36.268 140.002
{ca pro c 290}-12.689 38.113 137.971
{ca gly c 291}-10.874 40.331 140.462
{ca tyr c 292}-12.296 43.682 141.532
{ca leu c 293}-11.163 43.309 145.074
{ca val c 294}-8.292 42.187 147.215
{ca leu c 295}-9.091 41.158 150.74
{ca thr c 296}-6.361 41.17 152.896
{ca arg c 297}-6.268 41.078 156.633
{ca thr c 298}-3.907 42.735 159.092
{ca pro c 299}-3.896 41.033 162.483
{ca thr c 300}-6.936 43.231 163.591
{ca val c 301}-8.573 44.486 160.635
{ca leu c 302}-9.48 43.924 157.051
{ca thr c 303}-8.627 45.571 153.81
{ca his c 304}-10.983 45.787 150.844
{ca thr c 305}-8.928 47.409 148.177
{ca phe c 306}-10.742 48.398 144.992
{ca arg c 307}-9.455 47.909 141.449
{ca ala c 308}-12.838 48.319 139.867
{ca thr c 309}-15.314 51.236 139.833
{ca gly c 310}-19.141 51.47 140.197
{ca thr c 311}-21.986 50.129 142.296
{ca phe c 312}-21.107 46.746 143.763
{ca asn c 313}-22.605 44.247 146.088
{ca leu c 314}-20.767 42.962 148.863
{ca ser c 315}-21.637 39.797 150.687
{ca gly c 316}-20.011 38.084 153.49
{ca gly c 317}-18.793 38.35 157.096
{ca leu c 318}-15.682 36.958 158.875
{ca arg c 319}-13.93 35.722 162.004
{ca cys c 320}-13.375 38.28 164.84
{ca leu c 321}-14.887 39.017 168.128
{ca thr c 322}-15.622 42.529 168.234
{ca ser c 323}-18.36 44.717 166.815
{ca leu c 324}-17.696 46.103 163.222
{ca thr c 325}-16.737 49.775 162.612
{ca leu c 326}-17.217 50.557 158.989
{ca gly c 327}-14.552 52.925 157.606
{ca ala c 328}-13.47 53.472 154.127
{ca thr c 329}-11.272 55.785 152.08
{ca gly c 330}-11.308 57.771 148.84
{ca ala c 331}-13.972 57.965 146.107
{ca val c 332}-16.792 56.254 148.003
{ca val c 333}-20.568 56.434 148.313
{ca ile c 334}-21.733 53.956 150.958
{ca asn c 335}-25.147 52.539 150.106
{ca asp c 336}-26.127 49.834 152.579
{ca ile c 337}-23.983 48.634 155.478
{ca leu c 338}-25.497 45.758 157.431
{ca ala c 339}-23.466 44.226 160.038
{ca ile c 340}-24.609 41.231 162.078
{ca asp c 341}-22.23 40.218 164.892
{ca asn c 342}-22.289 37.669 167.694
{ca val c 343}-19.276 38.916 169.617
{ca gly c 344}-16.92 36.157 170.742
{ca thr c 345}-17.458 34.555 167.351
{ca ala c 346}-17.102 35.486 163.825
{ca ser c 347}-19.412 37.78 161.933
{ca asp c 348}-21.235 38.673 158.719
{ca tyr c 349}-21.39 41.813 156.634
{ca phe c 350}-23.559 42.622 153.688
{ca leu c 351}-23.051 46.143 152.361
{ca asn c 352}-23.645 47.898 148.973
{ca cys c 353}-21.288 50.779 148.232
{ca thr c 354}-20.303 52.713 145.152
{ca val c 355}-16.777 53.579 144.099
{ca ser c 356}-15.625 56.204 141.45
{ca ser c 357}-12.025 56.501 141.932
{ca leu c 358}-8.658 55.007 142.776
{ca pro c 359}-7.942 55.294 145.409
{ca ala c 360}-11.171 53.824 146.686
{ca thr c 361}-10.423 51.853 149.861
{ca val c 362}-12.637 50.124 152.339
{ca thr c 363}-11.77 48.469 155.6
{ca phe c 364}-13.762 46.828 158.452
{ca thr c 365}-12.48 47.449 161.933
{ca val c 366}-12.485 44.407 164.297
{ca ser c 367}-10.254 42.31 166.229
{ca gly c 368}-8.649 38.983 165.771
{ca val c 369}-9.202 38.545 162.127
{ca ala c 370}-8.794 34.786 162.044
{ca ala c 371}-10.687 34.064 158.836
{ca gly c 372}-11.721 36.305 155.954
{ca ile c 373}-14.358 35.344 153.402
{ca leu c 374}-16.255 37.424 150.874
{ca leu c 375}-18.055 37.589 147.548
{ca val c 376}-18.365 40.482 145.078
{ca gly c 377}-20.518 40.722 142.055
{ca arg c 378}-21.403 44.142 140.679
{ca ala c 379}-24.821 45.491 141.585
{ca arg c 380}-27.064 48.497 141.381
{ca ala c 381}-28.418 50.896 143.991
{ca asn c 382}-29.807 47.678 145.421
{ca val c 383}-30.973 47.098 148.987
{ca val c 384}-28.786 44.996 151.273
{ca asn c 385}-30.451 45.719 154.611
{ca leu c 386}-33.272 44.495 156.842
{ca leu c 387}-36.463 46.284 157.862

@kinemage 5
@caption (B&T Fig. 16.9)
TBSV subunits A (pink), B (skyblue), and C (seagreen), as they fit together into the triangular-shaped repeating unit of the T3 viral particle.  S domains are darker colored and p domains lighter.  Yellowtint spheres are calcium atoms that bind between subunits.  (from PDB file 2TBV)
@onewidth 
@viewid {outside}
@zoom 1.13
@zslab 130
@center -4.547 29.793 137.18
@matrix
1.0 0 0  0 1.0 0  0 0 1.0
@2viewid {3-fold vert}
@2zoom 1.13
@2zslab 180
@2center -4.547 29.793 137.18
@2matrix
-.402727 .031463 -.914779 -.915221 -.028551 .40194 -.013472 .999097 .040294
@group {TBSV} 
@subgroup {sub A} dominant 
@vectorlist {ca-ca} color= pink master= {s domain} 
{ca gly a 102}P -21.641 31.009 115.737
{ca val a 103}-18.437 33.087 115.87
{ca thr a 104}-18.938 36.68 116.696
{ca val a 105}-16.748 39.674 115.814
{ca thr a 106}-16.686 42.827 117.842
{ca ser a 107}-14.737 46.021 116.914
{ca his a 108}-15.533 48.704 119.454
{ca arg a 109}-13.992 51.578 121.452
{ca glu a 110}-14.261 51.327 125.244
{ca tyr a 111}-13.126 54.002 127.762
{ca leu a 112}-10.432 53.001 130.275
{ca thr a 113}-9.069 55.394 132.942
{ca gln a 114}-8.37 59.049 133.786
{ca val a 115}-4.526 59.556 134.281
{ca asn a 116}-3.549 61.719 137.207
{ca asn a 117}0.079 63.021 137.586
{ca ser a 118}2.903 62.383 139.994
{ca ser a 119}6.235 64.076 140.646
{ca gly a 120}7.313 60.702 141.708
{ca phe a 121}6.969 57.748 139.332
{ca val a 122}3.569 56.099 139.04
{ca val a 123}2.121 53.282 136.939
{ca asn a 124}-1.502 51.956 136.457
{ca gly a 125}-2.533 53.89 139.473
{ca gly a 126}0.77 53.427 141.28
{ca ile a 127}-1.077 50.237 141.461
{ca val a 128}-0.008 46.816 141.611
{ca gly a 129}-0.467 43.169 140.643
{ca asn a 130}-0.575 43.282 136.853
{ca ser a 131}-3.961 45. 137.008
{ca leu a 132}-4.465 45.767 133.403
{ca gln a 133}-3.99 42.376 131.653
{ca leu a 134}-5.326 42.386 128.092
{ca asn a 135}-7.802 39.512 128.203
{ca pro a 136}-11.481 40.336 127.9
{ca ser a 137}-12.271 39.915 130.934
{ca asn a 138}-10.54 42.064 132.853
{ca gly a 139}-13.795 43.455 134.231
{ca thr a 140}-11.089 45.833 135.393
{ca leu a 141}-10.004 46.934 131.935
{ca phe a 142}-12.916 46.294 129.535
{ca ser a 143}-16.097 47.849 130.899
{ca trp a 144}-18.149 46.931 127.836
{ca leu a 145}-16.765 43.736 126.372
{ca pro a 146}-17.223 42.313 129.875
{ca ala a 147}-20.546 40.537 129.45
{ca leu a 148}-20.363 39.534 125.79
{ca ala a 149}-17.291 37.276 125.906
{ca ser a 150}-18.751 35.798 129.087
{ca asn a 151}-20.891 33.713 126.749
{ca phe a 152}-17.655 32.486 125.178
{ca asp a 153}-14.466 30.518 125.752
{ca gln a 154}-11.76 31.433 123.285
{ca tyr a 155}-10.817 35.007 122.507
{ca ser a 156}-8.699 36.535 119.763
{ca phe a 157}-8.117 40.134 118.85
{ca asn a 158}-7.211 41.632 115.48
{ca ser a 159}-6.71 45.272 116.446
{ca val a 160}-6.196 46.942 119.795
{ca val a 161}-4.9 50.505 119.857
{ca leu a 162}-4.326 52.729 122.887
{ca asp a 163}-5.715 56.226 122.393
{ca tyr a 164}-4.56 59.161 124.519
{ca val a 165}-6.546 62.397 124.416
{ca pro a 166}-5.959 65.215 126.898
{ca leu a 167}-8.156 67.248 129.238
{ca cys a 168}-5.302 69.354 130.604
{ca gly a 169}-3.534 72.338 129.054
{ca thr a 170}-0.337 73.233 127.213
{ca thr a 171}1.299 74.344 130.457
{ca glu a 172}0.993 71.149 132.861
{ca val a 173}4.472 69.705 133.374
{ca gly a 174}4.816 65.933 133.128
{ca arg a 175}4.988 62.607 131.296
{ca val a 176}2.35 60.082 130.325
{ca ala a 177}3.463 56.782 128.813
{ca leu a 178}1.749 53.727 127.341
{ca tyr a 179}3.526 50.402 126.868
{ca phe a 180}3.122 46.696 126.121
{ca asp a 181}4.505 43.643 127.911
{ca lys a 182}3.906 40.267 126.249
{ca asp a 183}4.109 38.588 129.586
{ca ser a 184}0.788 39.174 131.311
{ca gln a 185}2.802 38.303 134.405
{ca asp a 186}6.161 40.072 134.583
{ca pro a 187}6.046 42.716 137.3
{ca glu a 188}5.861 46.46 136.755
{ca pro a 189}8. 49.43 135.751
{ca ala a 190}10.506 50.521 138.385
{ca asp a 191}11.898 53.774 136.978
{ca arg a 192}12.65 55.983 133.987
{ca val a 193}15.25 53.798 132.28
{ca glu a 194}13.054 50.702 132.517
{ca leu a 195}9.842 52.084 131.075
{ca ala a 196}11.719 53.311 128.013
{ca asn a 197}13.263 49.969 127.071
{ca phe a 198}10.024 48.247 126.137
{ca gly a 199}9.408 47.331 122.508
{ca val a 200}5.896 48.74 122.19
{ca leu a 201}6.08 52.047 124.085
{ca lys a 202}5.09 55.677 123.587
{ca glu a 203}6.527 58.746 125.302
{ca thr a 204}4.381 61.881 125.39
{ca ala a 205}4.063 65.093 127.338
{ca pro a 206}0.666 65.17 129.031
{ca trp a 207}-0.89 68.024 127.065
{ca ala a 208}0.019 66.489 123.711
{ca glu a 209}-1.94 63.824 121.893
{ca ala a 210}-0.75 60.24 121.662
{ca met a 211}-1.116 56.814 120.227
{ca leu a 212}-0.295 53.131 120.591
{ca arg a 213}-1.136 50.051 118.529
{ca ile a 214}-0.759 46.542 119.91
{ca pro a 215}0.947 43.442 118.544
{ca thr a 216}-1.757 40.795 118.21
{ca asp a 217}-1.098 37.157 117.4
{ca lys a 218}-3.961 34.891 116.356
{ca val a 219}-3.302 32.148 118.899
{ca lys a 220}-6.286 30.398 120.429
{ca arg a 221}-6.227 31.772 123.807
{ca tyr a 222}-8.538 31.081 126.744
{ca cys a 223}-10.736 33.36 128.84
{ca asn a 224}-10.831 33.233 132.633
{ca asp a 225}-13.825 31.125 133.636
{ca ser a 226}-11.909 28.339 135.121
{ca ala a 227}-8.753 29.465 136.781
{ca thr a 228}-5.294 29.317 135.619
{ca val a 229}-2.281 30.476 137.626
{ca asp a 230}-0.032 30.895 134.593
{ca gln a 231}-2.01 33.954 133.512
{ca lys a 232}0.673 34.334 130.873
{ca leu a 233}-0.075 31.336 128.68
{ca ile a 234}-3.672 32.549 128.376
{ca asp a 235}-3.41 36.342 128.385
{ca leu a 236}-2.556 38.32 125.257
{ca gly a 237}-0.515 41.09 126.891
{ca gln a 238}-0.053 43.427 129.855
{ca leu a 239}-0.883 47.219 129.345
{ca gly a 240}1.053 50.038 130.994
{ca ile a 241}0.413 53.735 131.565
{ca ala a 242}3.154 55.582 133.429
{ca thr a 243}3.638 59.198 134.525
{ca tyr a 244}6.734 60.743 136.013
{ca gly a 245}8.077 64.246 136.576
{ca gly a 246}4.816 66.037 137.351
{ca ala a 247}4.123 68.686 139.921
{ca gly a 248}0.851 67.371 141.339
{ca ala a 249}-1.178 64.17 141.135
{ca asp a 250}-4.031 65.858 139.291
{ca ala a 251}-5.65 64.897 135.994
{ca val a 252}-4.288 65.578 132.52
{ca gly a 253}-5.364 62.523 130.545
{ca glu a 254}-8.157 60.072 129.772
{ca leu a 255}-7.168 57.106 127.667
{ca phe a 256}-9.331 54.896 125.458
{ca leu a 257}-9.501 51.36 124.05
{ca ala a 258}-9.75 50.516 120.346
{ca arg a 259}-11.194 47.035 120.032
{ca ser a 260}-11.471 44.15 117.583
{ca val a 261}-12.281 40.701 118.95
{ca thr a 262}-13.227 37.25 117.685
{ca leu a 263}-15.456 35.238 120.003
{ca tyr a 264}-15.617 31.466 119.614
{ca phe a 265}-17.282 28.475 121.244
{ca pro a 266}-20.329 29.714 123.144
{ca gln a 267}-22.125 28.135 126.151
{ca pro a 268}-22.822 30.125 129.312
{ca thr a 269}-22.471 33.848 129.945
{ca asn a 270}-20.071 33.779 132.914
{ca thr a 271}-21.486 35.879 135.739
{ca leu a 272}-21.736 39.598 134.999
{ca leu a 273}-22.621 39.395 138.689
{ca ser a 274}-20.555 39.44 141.63
@vectorlist {ca-ca} color= pinktint master= {p domain} 
{ca ser a 274}P -20.555 39.44 141.63
{ca ser a 275}-20.767 37.604 144.685
{ca lys a 276}-18.297 38.397 147.489
{ca arg a 277}-18.145 36.724 150.868
{ca leu a 278}-16.147 37.783 153.903
{ca asp a 279}-15.584 34.902 156.435
{ca leu a 280}-17.231 35.662 159.94
{ca thr a 281}-14.048 36.816 161.668
{ca gly a 282}-12.257 35.987 158.45
{ca ser a 283}-10.763 36.919 155.332
{ca leu a 284}-12.601 35.485 152.404
{ca ala a 285}-15.36 32.968 151.514
{ca asp a 286}-16.253 32.375 147.866
{ca ala a 287}-15.979 34.179 144.697
{ca thr a 288}-17.797 34.217 141.33
{ca gly a 289}-16.629 37.488 139.803
{ca pro a 290}-15.662 38.885 137.648
{ca gly a 291}-14.048 41.154 140.228
{ca tyr a 292}-14.9 44.846 140.424
{ca leu a 293}-14.761 44.931 144.159
{ca val a 294}-12.812 43.718 147.128
{ca leu a 295}-14.641 43.516 150.405
{ca thr a 296}-12.575 43.428 153.203
{ca arg a 297}-13.403 44.008 156.803
{ca thr a 298}-11.391 45.631 159.575
{ca pro a 299}-12.574 44.608 163.032
{ca thr a 300}-15.221 47.488 162.975
{ca val a 301}-15.779 48.454 159.547
{ca leu a 302}-15.903 47.418 155.956
{ca thr a 303}-13.952 48.259 152.884
{ca his a 304}-15.42 48.352 149.387
{ca thr a 305}-12.476 49.054 147.193
{ca phe a 306}-13.206 49.755 143.533
{ca arg a 307}-11.251 48.398 140.571
{ca ala a 308}-13.977 49.118 138.087
{ca thr a 309}-15.656 52.38 137.001
{ca gly a 310}-19.307 53.369 136.275
{ca thr a 311}-22.798 52.976 137.675
{ca phe a 312}-23.074 49.818 139.753
{ca asn a 313}-25.605 48.105 141.886
{ca leu a 314}-24.82 47.039 145.2
{ca ser a 315}-26.788 44.474 147.114
{ca gly a 316}-26.304 43.039 150.451
{ca gly a 317}-25.957 43.736 154.186
{ca leu a 318}-23.756 42.153 156.912
{ca arg a 319}-23.126 41.215 160.533
{ca cys a 320}-22.709 44.106 163.054
{ca leu a 321}-24.761 45.696 165.682
{ca thr a 322}-24.697 49.242 165.126
{ca ser a 323}-26.455 51.593 162.743
{ca leu a 324}-24.658 52.151 159.318
{ca thr a 325}-22.785 55.411 158.52
{ca leu a 326}-22.195 55.589 154.834
{ca gly a 327}-18.818 57.137 153.933
{ca ala a 328}-16.838 56.83 150.84
{ca thr a 329}-13.755 58.289 149.187
{ca gly a 330}-12.57 59.619 145.83
{ca ala a 331}-14.389 59.789 142.474
{ca val a 332}-17.89 58.997 143.735
{ca val a 333}-21.492 59.915 142.978
{ca ile a 334}-23.779 58.219 145.505
{ca asn a 335}-27.117 57.314 143.947
{ca asp a 336}-29.241 55.333 146.389
{ca ile a 337}-28.178 54.317 149.893
{ca leu a 338}-30.718 52.172 151.717
{ca ala a 339}-29.765 50.803 154.954
{ca ile a 340}-32.004 48.492 156.977
{ca asp a 341}-30.656 47.598 160.44
{ca asn a 342}-31.953 45.661 163.427
{ca val a 343}-29.287 46.671 165.919
{ca gly a 344}-27.948 43.783 167.992
{ca thr a 345}-28.002 41.711 164.821
{ca ala a 346}-26.612 41.898 161.436
{ca ser a 347}-27.829 44.187 158.704
{ca asp a 348}-28.583 44.791 155.026
{ca tyr a 349}-27.528 47.468 152.588
{ca phe a 350}-28.691 48.104 149.084
{ca leu a 351}-27.106 51.169 147.499
{ca asn a 352}-26.464 52.349 143.879
{ca cys a 353}-23.416 54.568 143.44
{ca thr a 354}-21.315 55.692 140.52
{ca val a 355}-17.537 55.693 140.365
{ca ser a 356}-15.227 57.533 137.812
{ca ser a 357}-11.876 57.253 139.214
{ca leu a 358}-9.23 55.353 141.129
{ca pro a 359}-9.121 55.983 143.798
{ca ala a 360}-12.805 55.385 144.327
{ca thr a 361}-13.3 53.929 147.813
{ca val a 362}-16.372 53.115 149.798
{ca thr a 363}-16.703 51.958 153.358
{ca phe a 364}-19.636 51.26 155.748
{ca thr a 365}-19.12 52.266 159.335
{ca val a 366}-20.37 49.763 161.984
{ca ser a 367}-19.193 47.686 164.705
{ca gly a 368}-18.311 44.096 165.139
{ca val a 369}-18.058 43.104 161.571
{ca ala a 370}-18.491 39.384 162.092
{ca ala a 371}-19.673 38.442 158.611
{ca gly a 372}-19.459 40.265 155.29
{ca ile a 373}-21.554 39.347 152.263
{ca leu a 374}-22.276 41.238 149.067
{ca leu a 375}-23.144 41.113 145.384
{ca val a 376}-22.199 43.51 142.569
{ca gly a 377}-23.455 43.579 139.068
{ca arg a 378}-23.197 46.79 137.07
{ca ala a 379}-26.342 48.881 136.828
{ca arg a 380}-27.741 52.155 135.632
{ca ala a 381}-29.11 55.198 137.439
{ca asn a 382}-31.484 52.605 138.843
{ca val a 383}-33.57 52.912 142.
{ca val a 384}-32.521 50.903 145.048
{ca asn a 385}-34.732 52.519 147.683
{ca leu a 386}-38.205 52.259 149.201
{ca leu a 387}-41.066 54.755 149.071
@subgroup {sub B} dominant 
@vectorlist {ca-ca} color= sky master= {s domain} 
{ca gly b 102}P 11.699 44.35 115.964
{ca val b 103}13.049 40.837 116.625
{ca thr b 104}16.384 39.185 117.001
{ca val b 105}17.929 35.93 115.752
{ca thr b 106}20.953 34.063 117.349
{ca ser b 107}23.457 31.195 116.205
{ca his b 108}26.484 30.697 118.405
{ca arg b 109}28.016 27.841 120.391
{ca glu b 110}27.975 27.542 124.189
{ca tyr b 111}29.855 25.096 126.486
{ca leu b 112}27.761 23.293 129.117
{ca thr b 113}29.321 21.092 131.842
{ca gln b 114}32.323 18.604 132.146
{ca val b 115}31.244 14.963 132.137
{ca asn b 116}33.062 13.097 134.901
{ca asn b 117}32.57 9.37 135.538
{ca ser b 118}30.648 7.155 137.955
{ca ser b 119}30.508 3.378 137.556
{ca gly b 120}27.244 3.613 139.487
{ca phe b 121}24.423 5.117 137.18
{ca val b 122}24.192 8.882 137.355
{ca val b 123}22.282 11.776 135.801
{ca asn b 124}23.209 15.483 135.724
{ca gly b 125}25.819 15.267 138.451
{ca gly b 126}23.162 13.392 140.401
{ca ile b 127}21.508 16.722 140.673
{ca val b 128}17.88 16.544 140.622
{ca gly b 129}14.966 18.813 139.74
{ca asn b 130}15.113 18.956 135.946
{ca ser b 131}18.06 21.353 135.857
{ca leu b 132}19.084 20.997 132.2
{ca gln b 133}15.742 22.27 130.794
{ca leu b 134}16.015 23.92 127.611
{ca asn b 135}14.687 27.443 128.068
{ca pro b 136}17.049 30.38 127.714
{ca ser b 137}17.517 31.116 130.762
{ca asn b 138}18.712 28.423 132.376
{ca gly b 139}21.804 30.33 133.479
{ca thr b 140}22.752 26.896 134.744
{ca leu b 141}22.751 25.548 131.2
{ca phe b 142}23.377 28.578 128.946
{ca ser b 143}26.383 30.612 130.056
{ca trp b 144}26.337 33.075 127.174
{ca leu b 145}22.799 33.676 125.936
{ca pro b 146}22.396 34.488 129.61
{ca ala b 147}22.085 38.093 128.474
{ca leu b 148}20.101 38.392 125.261
{ca ala b 149}16.962 36.424 126.173
{ca ser b 150}16.966 38.743 129.192
{ca asn b 151}15.92 41.581 126.901
{ca phe b 152}13.214 39.318 125.488
{ca asp b 153}9.931 37.573 126.256
{ca gln b 154}9.275 34.821 123.722
{ca tyr b 155}11.909 32.456 122.401
{ca ser b 156}12.103 29.907 119.618
{ca phe b 157}14.854 27.549 118.643
{ca asn b 158}15.563 26.412 115.088
{ca ser b 159}18.547 24.178 115.773
{ca val b 160}19.872 22.651 118.958
{ca val b 161}22.633 20.053 118.766
{ca leu b 162}24.523 18.449 121.64
{ca asp b 163}28.277 18.224 121.13
{ca tyr b 164}30.513 15.744 122.967
{ca val b 165}34.297 15.922 122.743
{ca pro b 166}36.875 14.019 124.772
{ca leu b 167}39.055 14.72 127.816
{ca cys b 168}39.895 11.118 128.676
{ca gly b 169}41.795 8.389 126.838
{ca thr b 170}41.28 5.212 124.831
{ca thr b 171}41.41 3.095 127.976
{ca glu b 172}38.965 5.116 130.061
{ca val b 173}36.282 2.515 130.727
{ca gly b 174}32.66 3.654 130.71
{ca arg b 175}29.448 4.88 129.091
{ca val b 176}28.201 8.426 128.576
{ca ala b 177}24.724 9.17 127.239
{ca leu b 178}22.765 12.143 125.918
{ca tyr b 179}18.974 12.252 125.705
{ca phe b 180}15.903 14.451 125.275
{ca asp b 181}12.587 14.611 127.123
{ca lys b 182}9.82 16.777 125.691
{ca asp b 183}8.45 17.195 129.208
{ca ser b 184}10.612 19.796 130.912
{ca gln b 185}9.066 18.271 134.022
{ca asp b 186}8.985 14.475 133.97
{ca pro b 187}11.506 13.261 136.522
{ca glu b 188}14.927 11.846 135.717
{ca pro b 189}16.211 8.462 134.604
{ca ala b 190}16.224 5.913 137.412
{ca asp b 191}18.299 3.198 135.731
{ca arg b 192}19.775 1.918 132.48
{ca val b 193}16.505 0.652 131.029
{ca glu b 194}14.501 3.875 131.279
{ca leu b 195}17.272 5.875 129.656
{ca ala b 196}17.536 3.443 126.75
{ca asn b 197}13.826 3.626 126.048
{ca phe b 198}13.756 7.335 125.259
{ca gly b 199}13.053 8.53 121.729
{ca val b 200}15.925 11. 121.46
{ca leu b 201}18.94 9.095 122.819
{ca lys b 202}22.597 8.58 121.945
{ca glu b 203}24.977 6.147 123.633
{ca thr b 204}28.759 6.47 123.449
{ca ala b 205}32.006 5.156 124.845
{ca pro b 206}33.357 8.049 126.9
{ca trp b 207}36.555 8.225 124.856
{ca ala b 208}34.811 8.538 121.496
{ca glu b 209}33.312 11.738 120.176
{ca ala b 210}29.536 11.987 119.993
{ca met b 211}26.483 13.806 118.653
{ca leu b 212}22.833 14.709 119.146
{ca arg b 213}20.28 16.816 117.281
{ca ile b 214}17.329 18.271 119.172
{ca pro b 215}13.784 18.315 117.823
{ca thr b 216}12.437 21.828 117.313
{ca asp b 217}8.855 23.027 117.062
{ca lys b 218}7.889 26.564 116.082
{ca val b 219}5.645 27.25 119.067
{ca lys b 220}5.672 30.617 120.803
{ca arg b 221}7.071 29.77 124.076
{ca tyr b 222}7.669 32.004 127.091
{ca cys b 223}10.821 32.816 129.049
{ca asn b 224}10.9 32.766 132.843
{ca asp b 225}10.485 36.341 134.052
{ca ser b 226}7.052 35.988 135.712
{ca ala b 227}6.833 32.457 137.208
{ca thr b 228}5.013 29.514 135.999
{ca val b 229}4.71 26.218 137.84
{ca asp b 230}3.815 24.266 134.706
{ca gln b 231}7.399 24.699 133.532
{ca lys b 232}6.439 22.22 130.841
{ca leu b 233}4.132 24.284 128.656
{ca ile b 234}6.769 27.028 128.556
{ca asp b 235}9.941 24.954 128.258
{ca leu b 236}10.863 23.245 124.976
{ca gly b 237}12.559 20.044 126.15
{ca gln b 238}14.631 18.502 128.947
{ca leu b 239}18.394 17.581 128.356
{ca gly b 240}20.113 14.513 129.781
{ca ile b 241}23.705 13.347 130.136
{ca ala b 242}24.116 9.978 131.831
{ca thr b 243}27.117 7.806 132.668
{ca tyr b 244}27.174 4.255 133.93
{ca gly b 245}29.525 1.325 134.466
{ca gly b 246}32.762 3.282 134.818
{ca ala b 247}35.61 2.558 137.227
{ca gly b 248}36.398 5.921 138.811
{ca ala b 249}34.609 9.247 139.193
{ca asp b 250}37.025 11.132 136.957
{ca ala b 251}36.54 13.397 133.954
{ca val b 252}36.024 12.134 130.415
{ca gly b 253}33.832 14.642 128.601
{ca glu b 254}33.199 18.296 127.794
{ca leu b 255}29.757 18.927 126.398
{ca phe b 256}28.619 21.859 124.265
{ca leu b 257}25.524 23.66 122.963
{ca ala b 258}24.653 24.044 119.277
{ca arg b 259}22.471 27.133 119.3
{ca ser b 260}20.004 29.065 117.159
{ca val b 261}17.395 31.238 118.857
{ca thr b 262}14.697 33.693 117.827
{ca leu b 263}14.106 36.523 120.283
{ca tyr b 264}10.861 38.471 120.018
{ca phe b 265}9.233 41.457 121.714
{ca pro b 266}11.872 43.598 123.414
{ca gln b 267}11.991 43.521 127.25
{ca pro b 268}13.332 45.964 129.817
{ca thr b 269}16.251 44.139 131.406
{ca asn b 270}16.004 41.056 133.602
{ca thr b 271}18.494 40.794 136.459
{ca leu b 272}21.547 38.609 135.9
{ca leu b 273}22.97 39.289 139.357
{ca ser b 274}21.676 36.857 141.655
@vectorlist {ca-ca} color= bluetint master= {p domain} 
{ca ser b 274}P 21.676 36.857 141.655
{ca ser b 275}19.951 37.681 144.971
{ca lys b 276}19.716 34.965 147.646
{ca arg b 277}18.344 35.384 151.136
{ca leu b 278}18.571 32.959 154.034
{ca asp b 279}15.887 33.591 156.76
{ca leu b 280}17.498 34.535 160.237
{ca thr b 281}17.207 31.081 161.795
{ca gly b 282}15.487 30.023 158.606
{ca ser b 283}15.478 28.445 155.391
{ca leu b 284}14.853 30.887 152.625
{ca ala b 285}13.783 34.52 151.994
{ca asp b 286}13.446 35.783 148.425
{ca ala b 287}14.758 34.913 145.123
{ca thr b 288}15.413 36.709 141.808
{ca gly b 289}17.729 34.3 140.012
{ca pro b 290}18.424 32.934 137.735
{ca gly b 291}19.878 30.342 140.098
{ca tyr b 292}23.566 29.459 140.037
{ca leu b 293}23.79 29.09 143.75
{ca val b 294}22.005 27.72 146.753
{ca leu b 295}22.824 29.265 150.08
{ca thr b 296}21.982 27.301 152.825
{ca arg b 297}23.071 27.586 156.39
{ca thr b 298}23.781 24.914 158.983
{ca pro b 299}23.589 26.235 162.534
{ca thr b 300}27.339 27.33 162.325
{ca val b 301}28.257 27.591 158.849
{ca leu b 302}27.185 28.359 155.35
{ca thr b 303}26.894 26.411 152.178
{ca his b 304}27.434 27.876 148.72
{ca thr b 305}26.627 25.052 146.409
{ca phe b 306}27.372 25.597 142.727
{ca arg b 307}25.122 24.613 139.828
{ca ala b 308}26.841 26.869 137.364
{ca thr b 309}30.442 26.987 136.077
{ca gly b 310}32.912 29.856 135.369
{ca thr b 311}34.195 33.076 136.879
{ca phe b 312}31.614 34.607 139.193
{ca asn b 313}31.331 37.513 141.51
{ca leu b 314}30.215 37.1 144.875
{ca ser b 315}28.909 39.891 147.023
{ca gly b 316}27.599 39.91 150.445
{ca gly b 317}28.277 39.085 154.108
{ca leu b 318}26.035 37.666 156.89
{ca arg b 319}25.12 37.318 160.554
{ca cys b 320}27.659 35.525 162.84
{ca leu b 321}30.142 36.511 165.39
{ca thr b 322}33.25 34.914 164.569
{ca ser b 323}36. 35.577 162.059
{ca leu b 324}35.505 33.911 158.56
{ca thr b 325}37.538 30.835 157.474
{ca leu b 326}37.226 30.432 153.772
{ca gly b 327}37.054 26.774 152.675
{ca ala b 328}35.723 25.309 149.568
{ca thr b 329}35.559 21.996 147.735
{ca gly b 330}36.03 20.531 144.26
{ca ala b 331}36.804 22.269 140.946
{ca val b 332}37.728 25.683 142.348
{ca val b 333}40.111 28.541 141.612
{ca ile b 334}39.757 31.199 144.314
{ca asn b 335}40.349 34.673 142.91
{ca asp b 336}39.664 37.316 145.544
{ca ile b 337}38.478 36.621 149.087
{ca leu b 338}37.798 39.744 151.128
{ca ala b 339}36.332 39.319 154.435
{ca ile b 340}35.378 42.234 156.68
{ca asp b 341}34.173 41.233 160.166
{ca asn b 342}33.189 43.087 163.32
{ca val b 343}33.044 40.116 165.664
{ca gly b 344}29.983 40.082 167.914
{ca thr b 345}27.977 41.224 164.91
{ca ala b 346}27.334 40.084 161.488
{ca ser b 347}29.768 40.31 158.622
{ca asp b 348}30.437 40.92 154.93
{ca tyr b 349}32.222 38.924 152.272
{ca phe b 350}33.111 39.877 148.76
{ca leu b 351}35.054 37.189 146.911
{ca asn b 352}35.618 36.292 143.199
{ca cys b 353}36.217 32.605 142.521
{ca thr b 354}36.121 30.389 139.475
{ca val b 355}34.429 27.017 139.228
{ca ser b 356}34.9 24.276 136.489
{ca ser b 357}33.236 21.324 137.826
{ca leu b 358}30.467 19.692 139.813
{ca pro b 359}31.131 19.168 142.423
{ca ala b 360}32.269 22.7 143.085
{ca thr b 361}31.384 23.596 146.681
{ca val b 362}32.138 26.595 148.796
{ca thr b 363}31.452 27.208 152.44
{ca phe b 364}32.27 30.009 154.946
{ca thr b 365}33.14 28.904 158.433
{ca val b 366}31.61 30.985 161.292
{ca ser b 367}29.382 30.702 164.132
{ca gly b 368}25.807 31.478 164.812
{ca val b 369}24.607 31.889 161.323
{ca ala b 370}21.506 33.895 162.133
{ca ala b 371}20.995 35.562 158.763
{ca gly b 372}22.342 34.747 155.31
{ca ile b 373}22.286 37.195 152.413
{ca leu b 374}24.116 37.18 149.102
{ca leu b 375}24.184 38.215 145.462
{ca val b 376}25.746 36.463 142.453
{ca gly b 377}26.171 37.75 138.988
{ca arg b 378}28.813 36.206 136.75
{ca ala b 379}32.07 38.108 136.428
{ca arg b 380}35.551 37.975 135.024
{ca ala b 381}38.981 37.752 136.63
{ca asn b 382}37.802 40.948 138.282
{ca val b 383}39.183 42.504 141.457
{ca val b 384}37.092 42.287 144.621
{ca asn b 385}39.669 43.405 147.18
{ca leu b 386}41.07 46.544 148.797
{ca leu b 387}44.568 48.005 148.549
@subgroup {sub C} dominant 
@vectorlist {ca-ca} color= sea master= {s domain} 
{ca ile c 67}P -43.784 -6.564 104.756
{ca ile c 68}-44.46 -4.543 108.054
{ca thr c 69}-48.125 -3.636 107.928
{ca his c 70}-48.373 -0.967 110.612
{ca val c 71}-51.921 0.287 111.053
{ca gly c 72}-53.662 3.674 110.876
{ca gly c 73}-50.922 4.983 108.626
{ca val c 74}-51.236 6.524 105.186
{ca gly c 75}-47.83 7.052 103.581
{ca gly c 76}-46.525 10.236 105.194
{ca ser c 77}-47.535 9.677 108.654
{ca ile c 78}-45.752 9.128 112.039
{ca met c 79}-45.173 5.988 114.197
{ca ala c 80}-44.082 6.336 117.807
{ca pro c 81}-43.329 2.716 118.775
{ca val c 82}-43.45 0.872 122.034
{ca ala c 83}-39.69 0.396 122.02
{ca val c 84}-36.41 0.91 120.448
{ca ser c 85}-32.905 -0.497 120.879
{ca arg c 86}-29.684 -0.653 118.761
{ca gln c 87}-27.441 -3.71 118.926
{ca leu c 88}-23.847 -3.19 119.934
{ca val c 89}-20.829 -5.368 119.127
{ca gly c 90}-17.179 -6.196 119.652
{ca ser c 91}-15.122 -3.089 119.11
{ca lys c 92}-11.722 -4.557 118.395
{ca pro c 93}-9.159 -1.787 118.043
{ca lys c 94}-7.093 -0.775 115.155
{ca phe c 95}-3.589 0.701 115.491
{ca thr c 96}-2.279 2.508 112.45
{ca gly c 97}1.474 2.76 111.885
{ca arg c 98}1.961 6.448 111.03
{ca thr c 99}5.544 5.327 110.565
{ca ser c 100}6.493 8.588 112.319
{ca gly c 101}9.084 9.621 114.858
{ca gly c 102}8.193 5.903 114.826
{ca val c 103}5.077 6.95 116.775
{ca thr c 104}1.74 5.365 116.955
{ca val c 105}-1.967 5.923 116.261
{ca thr c 106}-4.989 4.239 117.895
{ca ser c 107}-8.756 4.143 117.02
{ca his c 108}-11.015 2.005 119.144
{ca arg c 109}-14.396 2.301 120.852
{ca glu c 110}-14.445 2.686 124.633
{ca tyr c 111}-17.751 2.687 126.599
{ca leu c 112}-18.205 5.443 129.197
{ca thr c 113}-21.149 5.372 131.64
{ca gln c 114}-24.759 4.275 132.149
{ca val c 115}-26.944 7.382 132.133
{ca asn c 116}-29.394 7.009 134.956
{ca asn c 117}-32.336 9.52 135.3
{ca ser c 118}-32.714 12.696 137.356
{ca ser c 119}-36.192 14.148 137.833
{ca gly c 120}-34.272 16.971 139.467
{ca phe c 121}-31.196 18.182 137.583
{ca val c 122}-28.057 16.091 137.469
{ca val c 123}-24.797 15.887 135.539
{ca asn c 124}-22.25 13.051 135.334
{ca gly c 125}-23.769 11.44 138.408
{ca gly c 126}-24.125 14.722 140.276
{ca ile c 127}-20.382 14.368 140.171
{ca val c 128}-18.336 17.314 140.425
{ca gly c 129}-14.741 18.281 139.671
{ca asn c 130}-14.984 18.062 135.884
{ca ser c 131}-14.085 14.379 135.614
{ca leu c 132}-15.153 13.626 132.362
{ca gln c 133}-12.06 15.512 131.148
{ca leu c 134}-11.006 14.487 127.646
{ca asn c 135}-7.305 13.761 128.05
{ca pro c 136}-6.197 10.155 127.731
{ca ser c 137}-5.825 9.417 130.784
{ca asn c 138}-8.648 10.119 132.462
{ca gly c 139}-8.56 6.582 133.83
{ca thr c 140}-11.777 8.151 135.051
{ca leu c 141}-13.043 8.359 131.483
{ca phe c 142}-11.146 6.006 129.138
{ca ser c 143}-11.078 2.41 130.337
{ca trp c 144}-8.775 0.988 127.671
{ca leu c 145}-6.593 3.851 126.46
{ca pro c 146}-5.53 3.838 130.095
{ca ala c 147}-2.196 2.194 129.346
{ca leu c 148}-0.865 3.075 125.905
{ca ala c 149}-0.779 6.888 125.812
{ca ser c 150}1.198 5.592 128.794
{ca asn c 151}4.297 4.873 126.728
{ca phe c 152}3.699 8.336 125.28
{ca asp c 153}3.762 12.056 126.019
{ca gln c 154}1.745 14.054 123.489
{ca tyr c 155}-1.802 13.229 122.486
{ca ser c 156}-3.971 14.417 119.616
{ca phe c 157}-7.364 13.263 118.484
{ca asn c 158}-8.904 13.398 115.015
{ca ser c 159}-12.408 12.135 115.757
{ca val c 160}-14.325 11.779 118.992
{ca val c 161}-18.078 11.265 118.821
{ca leu c 162}-20.493 10.707 121.704
{ca asp c 163}-22.909 7.848 121.081
{ca tyr c 164}-26.149 7.498 123.042
{ca val c 165}-28.077 4.231 122.835
{ca pro c 166}-30.967 3.433 125.169
{ca leu c 167}-31.888 0.562 127.478
{ca cys c 168}-35.209 2.097 128.506
{ca gly c 169}-38.548 2.31 126.707
{ca thr c 170}-40.719 4.738 124.763
{ca thr c 171}-42.663 5.593 127.906
{ca glu c 172}-40.014 6.69 130.39
{ca val c 173}-40.442 10.427 130.888
{ca gly c 174}-37.305 12.566 130.922
{ca arg c 175}-34.34 14.372 129.38
{ca val c 176}-30.747 13.362 128.711
{ca ala c 177}-28.175 15.745 127.247
{ca leu c 178}-24.63 15.66 125.887
{ca tyr c 179}-22.408 18.733 125.661
{ca phe c 180}-18.875 20.059 125.2
{ca asp c 181}-16.865 22.712 127.032
{ca lys c 182}-13.533 23.775 125.558
{ca asp c 183}-12.346 24.696 129.046
{ca ser c 184}-11.423 21.468 130.799
{ca gln c 185}-11.773 23.624 133.901
{ca asp c 186}-14.866 25.831 133.876
{ca pro c 187}-17.317 24.419 136.403
{ca glu c 188}-20.518 22.513 135.715
{ca pro c 189}-24.073 23.045 134.497
{ca ala c 190}-26.377 24.754 136.981
{ca asp c 191}-29.817 24.424 135.381
{ca arg c 192}-31.949 24.112 132.259
{ca val c 193}-31.126 27.436 130.627
{ca glu c 194}-27.384 26.934 131.088
{ca leu c 195}-27.02 23.462 129.632
{ca ala c 196}-28.792 24.58 126.467
{ca asn c 197}-26.504 27.513 125.691
{ca phe c 198}-23.419 25.459 124.924
{ca gly c 199}-22.102 25.376 121.367
{ca val c 200}-21.691 21.616 121.037
{ca leu c 201}-24.811 20.219 122.732
{ca lys c 202}-27.523 17.654 122.043
{ca glu c 203}-31.001 17.414 123.547
{ca thr c 204}-32.813 14.074 123.602
{ca ala c 205}-35.822 12.582 125.314
{ca pro c 206}-34.168 9.544 126.88
{ca trp c 207}-35.82 6.689 124.995
{ca ala c 208}-34.767 8.075 121.618
{ca glu c 209}-31.401 7.585 120.001
{ca ala c 210}-28.758 10.292 119.962
{ca met c 211}-25.433 11.667 118.747
{ca leu c 212}-22.586 14.107 119.308
{ca arg c 213}-19.35 14.818 117.447
{ca ile c 214}-16.512 16.774 119.023
{ca pro c 215}-14.487 19.741 117.805
{ca thr c 216}-10.871 18.587 117.68
{ca asp c 217}-7.917 20.873 117.07
{ca lys c 218}-4.52 19.407 116.217
{ca val c 219}-2.56 21.244 118.902
{ca lys c 220}0.282 19.406 120.591
{ca arg c 221}-1.163 18.785 123.881
{ca tyr c 222}0.344 17.035 126.899
{ca cys c 223}-0.766 13.999 128.894
{ca asn c 224}-0.869 14.089 132.9
{ca asp c 225}2.359 12.285 133.762
{ca ser c 226}3.921 15.221 135.388
{ca ala c 227}1.343 17.352 137.064
{ca thr c 228}-0.171 20.484 135.954
{ca val c 229}-2.691 22.741 137.685
{ca asp c 230}-3.955 24.543 134.589
{ca gln c 231}-5.77 21.428 133.389
{ca lys c 232}-7.136 23.681 130.676
{ca leu c 233}-3.984 24.429 128.712
{ca ile c 234}-3.367 20.684 128.412
{ca asp c 235}-6.807 19.089 128.134
{ca leu c 236}-8.75 18.97 124.873
{ca gly c 237}-12.215 19.482 126.365
{ca gln c 238}-14.816 18.876 129.072
{ca leu c 239}-17.636 16.254 128.368
{ca gly c 240}-21.123 16.608 129.825
{ca ile c 241}-24.128 14.317 130.187
{ca ala c 242}-27.146 15.869 131.883
{ca thr c 243}-30.62 14.625 132.784
{ca tyr c 244}-33.517 16.63 134.117
{ca gly c 245}-37.269 16.18 134.449
{ca gly c 246}-37.377 12.453 135.183
{ca ala c 247}-39.549 10.581 137.607
{ca gly c 248}-36.951 8.286 139.164
{ca ala c 249}-33.167 7.985 139.188
{ca asp c 250}-33.217 4.692 137.305
{ca ala c 251}-31.413 3.739 134.103
{ca val c 252}-32.439 4.659 130.569
{ca gly c 253}-29.121 5.15 128.797
{ca glu c 254}-25.609 3.829 128.224
{ca leu c 255}-23.324 6.107 126.276
{ca phe c 256}-20.231 5.245 124.243
{ca leu c 257}-16.945 6.756 123.047
{ca ala c 258}-15.863 6.96 119.403
{ca arg c 259}-12.085 7.123 119.451
{ca ser c 260}-9.178 8.221 117.273
{ca val c 261}-5.766 9.344 118.796
{ca thr c 262}-2.284 10.249 117.589
{ca leu c 263}0.397 9.046 119.987
{ca tyr c 264}3.77 11.052 119.828
{ca phe c 265}7.185 11.134 121.474
{ca pro c 266}6.953 7.695 123.074
{ca gln c 267}8.611 7.422 126.529
{ca pro c 268}9.788 5.122 129.326
{ca thr c 269}6.337 4.053 130.502
{ca asn c 270}4.691 6.098 133.251
{ca thr c 271}3.23 4.53 136.387
{ca leu c 272}-0.505 4.759 137.008
{ca leu c 273}-0.357 4.871 140.803
{ca ser c 274}-2.333 7.128 143.065
@vectorlist {ca-ca} color= greentint master= {p domain} 
{ca ser c 274}P -2.333 7.128 143.065
{ca ser c 275}-0.858 9.312 145.793
{ca lys c 276}-3.231 11.454 147.884
{ca arg c 277}-2.281 13.602 150.839
{ca leu c 278}-4.582 15.304 153.315
{ca asp c 279}-2.89 18.246 155.19
{ca leu c 280}-2.708 17.618 159.082
{ca thr c 281}-5.728 19.736 159.999
{ca gly c 282}-5.968 20.597 156.332
{ca ser c 283}-7.395 20.183 153.073
{ca leu c 284}-4.912 18.86 150.605
{ca ala c 285}-1.164 18.142 150.188
{ca asp c 286}0.129 16.774 146.885
{ca ala c 287}-1.206 14.918 144.03
{ca thr c 288}0.156 12.571 141.332
{ca gly c 289}-2.999 10.947 139.987
{ca pro c 290}-4.527 10.149 137.852
{ca gly c 291}-7.492 10.689 140.162
{ca tyr c 292}-9.835 7.847 141.072
{ca leu c 293}-10.266 9.005 144.599
{ca val c 294}-10.77 12.055 146.727
{ca leu c 295}-9.711 11.821 150.325
{ca thr c 296}-11.147 14.211 152.406
{ca arg c 297}-11.346 14.319 156.138
{ca thr c 298}-14.073 15.605 158.436
{ca pro c 299}-12.796 16.402 161.918
{ca thr c 300}-13.365 12.679 162.975
{ca val c 301}-13.509 10.658 159.994
{ca leu c 302}-12.36 10.141 156.473
{ca thr c 303}-14.006 10.13 153.121
{ca his c 304}-12.896 7.965 150.209
{ca thr c 305}-15.123 9.023 147.4
{ca phe c 306}-14.935 6.972 144.211
{ca arg c 307}-14.888 8.354 140.671
{ca ala c 308}-13.552 5.187 139.155
{ca thr c 309}-14.947 1.626 139.015
{ca gly c 310}-13.37 -1.859 139.464
{ca thr c 311}-10.981 -3.742 141.71
{ca phe c 312}-8.514 -1.376 143.347
{ca asn c 313}-5.757 -1.527 145.851
{ca leu c 314}-5.67 0.687 148.648
{ca ser c 315}-2.591 1.407 150.675
{ca gly c 316}-2.03 3.636 153.529
{ca gly c 317}-3.067 4.567 157.081
{ca leu c 318}-3.423 7.958 158.858
{ca arg c 319}-3.361 10.071 162.007
{ca cys c 320}-6.052 9.338 164.674
{ca leu c 321}-6.195 7.642 167.952
{ca thr c 322}-8.944 5.334 167.873
{ca ser c 323}-9.486 1.894 166.4
{ca leu c 324}-10.79 1.841 162.717
{ca thr c 325}-14.433 0.954 161.87
{ca leu c 326}-14.665 0.179 158.221
{ca gly c 327}-17.917 1.415 156.635
{ca ala c 328}-18.689 2.127 153.103
{ca thr c 329}-21.63 2.981 150.87
{ca gly c 330}-23.155 2.026 147.522
{ca ala c 331}-21.895 -0.401 144.852
{ca val c 332}-19.18 -2.087 146.916
{ca val c 333}-17.576 -5.501 147.312
{ca ile c 334}-15.015 -5.369 150.125
{ca asn c 335}-12.104 -7.704 149.445
{ca asp c 336}-9.419 -7.302 152.095
{ca ile c 337}-9.559 -4.859 155.003
{ca leu c 338}-6.439 -4.843 157.158
{ca ala c 339}-6.216 -2.342 159.796
{ca ile c 340}-3.172 -1.944 162.036
{ca asp c 341}-3.582 0.618 164.842
{ca asn c 342}-1.489 1.757 167.788
{ca val c 343}-4.13 3.814 169.557
{ca gly c 344}-2.886 7.189 170.779
{ca thr c 345}-1.009 7.488 167.502
{ca ala c 346}-1.772 7.379 163.92
{ca ser c 347}-2.58 4.268 161.958
{ca asp c 348}-2.301 2.254 158.745
{ca tyr c 349}-4.857 0.644 156.486
{ca phe c 350}-4.359 -1.636 153.555
{ca leu c 351}-7.611 -2.846 152.013
{ca asn c 352}-8.659 -4.182 148.545
{ca cys c 353}-12.258 -3.463 147.578
{ca thr c 354}-14.229 -3.494 144.366
{ca val c 355}-16.587 -0.79 143.174
{ca ser c 356}-19.272 -1.003 140.349
{ca ser c 357}-21.262 2.027 140.72
{ca leu c 358}-21.59 5.696 141.562
{ca pro c 359}-22.347 6.179 144.155
{ca ala c 360}-19.612 4.022 145.598
{ca thr c 361}-18.432 5.597 148.861
{ca val c 362}-16.024 4.452 151.492
{ca thr c 363}-15.184 5.982 154.82
{ca phe c 364}-12.982 4.988 157.813
{ca thr c 365}-14.353 5.808 161.218
{ca val c 366}-11.826 7.23 163.754
{ca ser c 367}-11.157 10.178 165.746
{ca gly c 368}-8.959 13.166 165.441
{ca val c 369}-8.082 12.903 161.844
{ca ala c 370}-4.964 15.04 161.969
{ca ala c 371}-3.233 13.728 158.858
{ca gly c 372}-4.533 11.771 155.878
{ca ile c 373}-2.282 9.913 153.455
{ca leu c 374}-3.056 7.271 150.86
{ca leu c 375}-2.141 5.622 147.578
{ca val c 376}-4.382 3.994 144.953
{ca gly c 377}-3.386 1.997 141.977
{ca arg c 378}-5.889 -0.392 140.428
{ca ala c 379}-5.52 -4.046 141.342
{ca arg c 380}-7.092 -7.442 141.022
{ca ala c 381}-8.728 -9.781 143.522
{ca asn c 382}-5.333 -9.492 145.172
{ca val c 383}-4.499 -10.263 148.794
{ca val c 384}-3.827 -7.353 151.141
{ca asn c 385}-3.889 -9.178 154.474
{ca leu c 386}-1.623 -11.096 156.844
{ca leu c 387}-1.755 -14.759 157.84
@subgroup {het groups} 
@spherelist {Ca g} color= yellowtint radius= .5
{Ca g 1} -13.9 29. 130.5
{Ca g 2} 4.5 14. 130.
{Ca g 3} 9. 38. 131.
{Ca u 1} -17.5 27.5 129.
{Ca u 2} 9.3 12.5 129.5
{Ca u 3} 8.5 42. 130.
@group off {pseudo 3} dominant 
@vectorlist {Lines} color=white
{pseudo 3} P 0.895 26.677 112.966
{pseudo 3} -0.277 26.543 139.624

@kinemage 6
@caption (B&T Fig. 16.14a)
STNV as an example of the 8-stranded jellyroll Greek key organization of virus subunits.  Animate, to build up the pattern.  The 8 strands and their H-bonds are colored to match Fig. 16.13 and 16.14, and to reflect their pairing up as 1 & 8 (seagreen), 2 & 7 (pink), 3 & 6 (skyblue), and 4 & 5 (yellow).  
(from PDB file 2STV)
@onewidth 
@viewid {sheet edge}
@zoom 1.06
@zslab 120
@center -9.542 71.685 25.115
@matrix
-.940067 -.257371 .223681 .218149 .050243 .974621 -.262079 .965005 .008913
@2viewid {sheet face}
@2zoom 1.06 
@2zslab 120
@2center -9.542 71.685 25.115
@2matrix
-0.24442 -0.02588 -0.96932 -0.92604  0.30271  0.22542  0.28758  0.95273 -0.09796
@group {STNV} 
@subgroup {ends} dominant off
@vectorlist {mc lp} color=white
{ca thr 12}P -0.315 45.239 4.699
{ca met 13}-2.253 48.386 5.762
{ca arg 14}0.018 49.19 8.697
{ca ala 15}3.173 49.746 6.678
{ca val 16}1.565 51.646 3.816
{ca lys 17}0.185 54.139 6.304
{ca arg 18}3.723 55.098 7.268
{ca met 19}5.24 55.286 3.792
{ca ile 20}2.438 57.748 3.238
{ca asn 21}3.066 59.792 6.344
{ca thr 22}6.824 60.054 5.778
{ca his 23}5.928 61.966 2.612
{ca leu 24}3.553 64.418 4.257
{ca glu 25}4.916 67.39 6.143
{ca his 26}4.039 67.397 9.806
{ca met 94}P -20.954 69.486 14.168
{ca asn 95}-19.547 73.108 14.502
{ca arg 96}-20.929 75.653 12.024
{ca gly 97}-18.822 78.765 12.901
{ca thr 98}-19.032 79.574 16.603
{ca thr 99}-17.491 79.062 19.978
{ca pro 100}-19.806 76.712 21.879
{ca thr 101}-21.284 78.03 25.073
{ca val 102}-20.981 76.321 28.459
{ca leu 103}-24.658 75.236 28.561
{ca glu 104}-24.097 73.29 25.345
{ca val 105}-21.562 70.986 27.01
{ca leu 106}-22.659 71.152 30.69
{ca asn 107}-26.26 70.513 31.927
{ca thr 108}-25.993 73.56 34.214
{ca ala 109}-23.295 76.23 34.572
{ca asn 110}-21.742 74.554 37.594
{ca phe 111}-18.325 72.934 37.997
{ca met 112}-19.885 69.752 39.589
{ca ser 113}-22.408 69.23 36.721
{ca gln 114}-22.693 66.265 34.36
{ca tyr 115}-22.877 66.725 30.586
{ca asn 116}-25.889 68.171 28.759
{ca pro 117}-27.958 65.014 27.958
{ca ile 118}-29.307 66.202 24.631
{ca thr 119}-26.036 67.297 23.057
{ca leu 120}-24.105 64.213 24.085
{ca gln 121}-26.85 61.901 22.824
{ca gln 122}-26.611 63.253 19.247
{ca lys 123}-22.791 63.419 19.749
{ca arg 124}-22.349 67.053 19.16
{ca thr 193}P -0.566 67.002 8.115
{ca asp 194}-1.918 69.253 5.434
{ca ala 195}-1.71 67.199 2.253

@group {pair 1} dominant animate
@subgroup {pr1}
@vectorlist {mc pr 1} color=sea
{ca his 26}P 4.039 67.397 9.806
{c his 26}4.245 68.798 10.389
{o his 26}5.183 69.036 11.165
{c his 26}P 4.245 68.798 10.389
{n lys 27}3.347 69.686 9.986
{ca lys 27}3.349 71.091 10.433
{c lys 27}3.028 71.108 11.941
{o lys 27}2.462 70.148 12.485
{c lys 27}P 3.028 71.108 11.941
{n arg 28}3.393 72.198 12.606
{ca arg 28}3.171 72.329 14.062
{c arg 28}2.664 73.72 14.443
{o arg 28}3.032 74.727 13.82
{c arg 28}P 2.664 73.72 14.443
{n phe 29}1.83 73.703 15.467
{ca phe 29}1.201 74.908 16.018
{c phe 29}1.241 74.861 17.552
{o phe 29}0.879 73.848 18.17
{c phe 29}P 1.241 74.861 17.552
{n ala 30}1.689 75.977 18.102
{ca ala 30}1.817 76.182 19.553
{c ala 30}1.01 77.411 19.949
{o ala 30}0.84 78.348 19.153
{c ala 30}P 1.01 77.411 19.949
{n leu 31}0.535 77.374 21.168
{ca leu 31}-0.297 78.442 21.708
{c leu 31}-0.23 78.371 23.242
{o leu 31}-0.207 77.28 23.83
{c leu 31}P -0.23 78.371 23.242
{n ile 32}-0.197 79.549 23.84
{ca ile 32}-0.13 79.708 25.302
{c ile 32}-1.183 80.741 25.739
{o ile 32}-1.368 81.779 25.086
{c ile 32}P -1.183 80.741 25.739
{n asn 33}-1.84 80.41 26.837
{ca asn 33}-2.912 81.233 27.434
{c asn 33}-2.742 81.253 28.96
{o asn 33}-3.278 80.391 29.673
{c asn 33}P -2.742 81.253 28.96
{n ser 34}-1.994 82.252 29.416
{ca ser 34}-1.662 82.419 30.848
{c ser 34}-2.434 83.544 31.561
{o ser 34}-2.966 84.461 30.916
{c ser 34}P -2.434 83.544 31.561
{n gly 35}-2.424 83.373 32.884
{ca gly 35}-3.01 84.289 33.897
{c gly 35}-4.5 84.587 33.7
{o gly 35}-4.909 85.752 33.586
{c gly 35}P -4.5 84.587 33.7
{n asn 36}-5.287 83.539 33.664
{ca asn 36}-6.739 83.665 33.517
{c asn 36}-7.373 83.378 34.852
{o asn 36}-6.815 82.642 35.68
{c asn 36}P -7.373 83.378 34.852
{n thr 37}-8.519 83.954 35.046
{ca thr 37}-9.225 83.762 36.291
{c thr 37}-10.312 82.726 36.139
{o thr 37}-10.952 82.623 35.081
{c thr 37}P -10.312 82.726 36.139
{n asn 38}-10.429 82.032 37.238
{ca asn 38}-11.404 80.987 37.448
@vectorlist {end1} color=greentint
{ca asn 38}P -11.404 80.987 37.448
{ca ala 39}-14.991 81.299 36.291
@vectorlist {end 1} color=greentint
{ca leu 180}P -13.36 83.763 40.562
{ca val 181}-10.108 84.623 42.208
{ca gly 182}-7.736 81.709 41.378
@vectorlist {mc pr 1} color=sea
{ca gly 182}P -7.736 81.709 41.378
{c gly 182}-7.337 81.946 39.912
{o gly 182}-8.142 82.426 39.101
{c gly 182}P -7.337 81.946 39.912
{n leu 183}-6.098 81.6 39.601
{ca leu 183}-5.547 81.762 38.24
{c leu 183}-5.184 80.406 37.622
{o leu 183}-4.684 79.503 38.31
{c leu 183}P -5.184 80.406 37.622
{n trp 184}-5.452 80.303 36.323
{ca trp 184}-5.128 79.096 35.543
{c trp 184}-4.394 79.498 34.264
{o trp 184}-4.65 80.566 33.689
{c trp 184}P -4.394 79.498 34.264
{n asp 185}-3.5 78.612 33.876
{ca asp 185}-2.678 78.76 32.668
{c asp 185}-2.859 77.529 31.8
{o asp 185}-3.217 76.448 32.29
{c asp 185}P -2.859 77.529 31.8
{n ser 186}-2.609 77.704 30.529
{ca ser 186}-2.735 76.605 29.58
{c ser 186}-1.878 76.86 28.348
{o ser 186}-1.594 78.015 27.996
{c ser 186}P -1.878 76.86 28.348
{n ser 187}-1.51 75.744 27.766
{ca ser 187}-0.691 75.674 26.558
{c ser 187}-1.185 74.493 25.739
{o ser 187}-1.676 73.495 26.288
{c ser 187}P -1.185 74.493 25.739
{n tyr 188}-1.045 74.63 24.446
{ca tyr 188}-1.515 73.613 23.512
{c tyr 188}-0.589 73.536 22.307
{o tyr 188}-0.009 74.546 21.882
{c tyr 188}P -0.589 73.536 22.307
{n glu 189}-0.493 72.325 21.806
{ca glu 189}0.329 72.009 20.641
{c glu 189}-0.362 70.952 19.799
{o glu 189}-0.93 69.985 20.327
{c glu 189}P -0.362 70.952 19.799
{n ala 190}-0.283 71.177 18.513
{ca ala 190}-0.877 70.285 17.533
{c ala 190}0.091 70.029 16.384
{o ala 190}0.674 70.967 15.819
{c ala 190}P 0.091 70.029 16.384
{n val 191}0.22 68.757 16.095
{ca val 191}1.039 68.255 14.992
{c val 191}0.045 67.718 13.977
{o val 191}-0.753 66.818 14.278
{c val 191}P 0.045 67.718 13.977
{n tyr 192}0.091 68.267 12.791
{ca tyr 192}-0.862 67.873 11.76
{c tyr 192}-0.257 67.877 10.368
{o tyr 192}0.753 68.549 10.111
{c tyr 192}P -0.257 67.877 10.368
{n thr 193}-0.918 67.108 9.525
{ca thr 193}-0.566 67.002 8.115
@vectorlist {Hb 1} color=green master= {Hbonds}
{lys 27 hn} P U 2.641 69.375 9.349
{tyr 192 o} U 1.319 68.797 9.882
{phe 29 hn} P U 1.624 72.816 15.88
{ala 190 o} U 0.959 71.522 15.837
{leu 31 hn} P U 0.758 76.582 21.736
{tyr 188 o} U 0.221 75.157 21.838
{asn 33 hn} P U -1.583 79.549 27.276
{ser 186 o} U -1.591 78.475 27.78
{asn 36 hn} P U -4.867 82.635 33.74
{trp 184 o} U -4.715 81.187 33.704
{asn 38 hn} P U -9.795 82.246 37.981
{gly 182 o} U -8.638 82.372 38.765
{trp 184 hn} P U -5.89 81.079 35.868
{asn 36 o} U -6.537 82.173 35.736
{ser 186 hn} P U -2.328 78.612 30.218
{asn 33 o} U -2.993 79.857 29.837
{tyr 188 hn} P U -0.602 75.459 24.104
{leu 31 o} U -0.326 76.734 23.912
{ala 190 hn} P U 0.205 71.994 18.206
{phe 29 o} U 0.677 73.292 18.181
{tyr 192 hn} P U 0.789 68.959 12.605
{lys 27 o} U 1.96 69.791 12.521

@group {pair 12} dominant animate
@subgroup {pr 1} instance= {pr1}
@subgroup {pr2}
@vectorlist {mc pr 2} color=pink
{ca ala 39}P -14.991 81.299 36.291
{c ala 39}-15.972 80.267 36.824
{o ala 39}-15.838 79.063 36.561
{c ala 39}P -15.972 80.267 36.824
{n thr 40}-16.937 80.764 37.561
{ca thr 40}-17.967 79.915 38.165
{c thr 40}-19.096 79.627 37.152
{o thr 40}-19.906 78.708 37.343
{c thr 40}P -19.096 79.627 37.152
{n ala 41}-19.131 80.422 36.089
{ca ala 41}-20.135 80.283 35.007
{c ala 41}-19.486 79.562 33.825
{o ala 41}-20.177 78.985 32.972
{c ala 41}P -19.486 79.562 33.825
{n gly 42}-18.167 79.64 33.849
{ca gly 42}-17.294 79.001 32.862
{c gly 42}-17.1 79.853 31.613
{o gly 42}-17.849 80.81 31.369
{c gly 42}P -17.1 79.853 31.613
{n thr 43}-16.082 79.426 30.899
{ca thr 43}-15.65 80.011 29.634
{c thr 43}-15.159 78.888 28.737
{o thr 43}-14.729 77.828 29.216
{c thr 43}P -15.159 78.888 28.737
{n val 44}-15.236 79.145 27.459
{ca val 44}-14.786 78.193 26.447
{c val 44}-13.708 78.868 25.608
{o val 44}-13.925 79.947 25.037
{c val 44}P -13.708 78.868 25.608
{n gln 45}-12.57 78.206 25.563
{ca gln 45}-11.403 78.699 24.827
{c gln 45}-11.166 77.898 23.553
{o gln 45}-11.47 76.697 23.488
{c gln 45}P -11.166 77.898 23.553
{n asn 46}-10.625 78.63 22.6
{ca asn 46}-10.274 78.119 21.273
{c asn 46}-8.84 77.615 21.303
{o asn 46}-7.954 78.243 21.902
{c asn 46}P -8.84 77.615 21.303
{n leu 47}-8.632 76.49 20.652
{ca leu 47}-7.307 75.873 20.614
{c leu 47}-6.802 75.613 19.176
{o leu 47}-5.622 75.831 18.865
{c leu 47}P -6.802 75.613 19.176
{n ser 48}-7.671 75.151 18.286
{ca ser 48}-7.253 74.818 16.891
@vectorlist {end2} color=pinktint
{ca ser 48}P -7.253 74.818 16.891
{ca asn 49}-8.729 78.09 15.543
{ca gly 50}-5.213 79.688 15.569
{ca ile 51}-4.237 77.575 12.541
{ca ile 52}-4.999 80.027 9.744
{ca gln 53}-4.47 79.912 6.005
{ca gly 54}-0.906 80.8 5.027
{ca asp 55}2.187 79.003 3.726
@vectorlist {end 2} color=pinktint
{ca ala 164}P -16.796 81.905 12.189
{ca ser 165}-13.801 79.899 10.92
{ca asn 166}-14.409 77.028 13.299
{ca gly 167}-15.643 73.873 11.767
{ca pro 168}-16.51 70.291 12.516
{ca gly 169}-13.597 68.77 14.388
{ca ala 170}-12.732 72.042 16.099
{ca ile 171}-10.889 71.593 19.366
@vectorlist {mc pr 2} color=pink
{ca ile 171}P -10.889 71.593 19.366
{c ile 171}-11.018 72.812 20.304
{o ile 171}-10.575 73.923 19.974
{c ile 171}P -11.018 72.812 20.304
{n phe 172}-11.637 72.542 21.459
{ca phe 172}-11.907 73.554 22.507
{c phe 172}-11.593 73.044 23.912
{o phe 172}-11.288 71.858 24.108
{c phe 172}P -11.593 73.044 23.912
{n met 173}-11.687 73.985 24.837
{ca met 173}-11.462 73.734 26.263
{c met 173}-12.372 74.626 27.099
{o met 173}-12.359 75.858 26.963
{c met 173}P -12.372 74.626 27.099
{n leu 174}-13.121 73.938 27.928
{ca leu 174}-14.071 74.54 28.857
{c leu 174}-13.434 74.576 30.246
{o leu 174}-12.934 73.557 30.745
{c leu 174}P -13.434 74.576 30.246
{n gln 175}-13.473 75.754 30.827
{ca gln 175}-12.929 76.001 32.167
{c gln 175}-14.039 76.513 33.078
{o gln 175}-14.702 77.516 32.775
{c gln 175}P -14.039 76.513 33.078
{n ile 176}-14.218 75.813 34.174
{ca ile 176}-15.231 76.168 35.176
{c ile 176}-14.715 75.761 36.566
{o ile 176}-14.103 74.696 36.734
{c ile 176}P -14.715 75.761 36.566
{n gly 177}-14.981 76.643 37.53
{ca gly 177}-14.553 76.459 38.937
@vectorlist {end 2} color=pinktint
{ca gly 177}P -14.553 76.459 38.937
{ca asp 178}-16.137 77.46 42.282
{ca ser 179}-14.253 80.741 42.727
{ca leu 180}-13.36 83.763 40.562
@vectorlist {Hb 2} color= red master= {Hbonds}
{thr 43 hn} P U -15.575 78.643 31.259
{gln 175 o} U -14.964 77.854 32.32
{gln 45 hn} P U -12.514 77.336 26.054
{met 173 o} U -12.406 76.301 26.69
{leu 47 hn} P U -9.401 76.06 20.179
{ile 171 o} U -10.223 74.564 20.036
{ser 48 hn} P U -8.62 75.031 18.578
{ile 171 o} U -9.988 74.255 19.555
{met 173 hn} P U -11.924 74.91 24.538
{gln 45 o} U -11.606 76.161 23.803
{gln 175 hn} P U -13.896 76.505 30.32
{thr 43 o} U -14.479 77.431 29.547
{gly 177 hn} P U -15.494 77.463 37.279
{ala 39 o} U -15.735 78.583 36.776

@group {pair 123} dominant animate
@subgroup {pr 1} instance= {pr1}
@subgroup {pr 2} instance= {pr2}
@subgroup {pr3}
@vectorlist {end3} color=bluetint
{ca asp 55}P 2.187 79.003 3.726
{ca asp 56}4.155 78.815 7.057
{ca ile 57}4.807 75.847 9.383
{ca asn 58}1.877 76.71 11.741
{ca gln 59}-0.603 77.494 9.005
{ca arg 60}-2.722 75.589 6.535
{ca ser 61}