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Richardson Laboratory Dissertations

2015Jain

(11 MB)

Swati Jain (2015) "RNA 3D Structure Analysis and Validation, and Design Algorithms for Proteins and RNA"  Doctoral Dissertation; Dept. of Biochemistry; Duke University, 162 pages.

2015Williams

(13 MB)

Christopher J. Williams (2015) "Using C-­‐‑Alpha Geometry to Describe Protein Secondary Structure and Motifs"  Doctoral Dissertation; Dept. of Biochemistry; Duke University, 248 pages.

2013Kapral

(22 MB)

Gary Kapral (2012) "RNA Backbone Validation, Correction, and Implications for RNA-Protein Interfaces"  Doctoral Dissertation; Dept. of Biochemistry; Duke University, 253 pages.

2012Keedy

(104 MB)

Daniel A. Keedy (2012) "Using Protein-Likeness to Validate Conformational Alternatives"  Doctoral Dissertation; Dept. of Biochemistry; Duke University, 227 pages.

2010Chen

(52 MB)

Vincent B. Chen (2010) "Building Better Backbones: Visualizations, Analyses, and Tools for Higher Quality Macromolecular Structure Models"  Doctoral Dissertation; Dept. of Biochemistry; Duke University, 272 pages.
Software: JiffiLoop (1 MB); KiNG (6 MB); RDCvis (1 MB)

2010Block

(33 MB)

Jeremy N. Block (2010) "NMR Structure Improvement: A Structural Bioinformatics & Visualization Approach." Doctoral Dissertation; Dept. of Biochemistry; Duke University, 309 pages.

2009Headd

(61 MB)

Jeffrey J. Headd (2009) "Analysis and Error Correction in Structures of Macromolecular Interiors and Interfaces"  Doctoral Dissertation; Computational Biology & Bioinformatics Program; Duke University, 215 pages.

2007Murray

(17 MB)

Laura Weston Murray (2007) "RNA Backbone Rotamers and Chiropraxis" Doctoral Dissertation; Dept. of Biochemistry; Duke University, 169 pages.

2006Davis

(18 MB)

Ian W. Davis (2006) "Local Motion and Local Accuracy In Protein Backbone" Doctoral Dissertation; Dept. of Biochemistry; Duke University, 333 pages.

2000Word

(8 MB)

J. Michael Word (2000) "All-Atom Small-Probe Contact Surface Analysis: An information-rich description of molecular goodness-of-fit" Doctoral Dissertation; Dept. of Biochemistry; Duke University, 273 pages.