| README.nacontacts | Home Page: Richardsons' Laboratory | J. Michael Word - 5/2000 |
NAcontacts is a perl script which will read a pdb file with hydrogens and write a table of contact information between nucleic acid bases in different layers.
| flag | action |
|---|---|
| none | base layer to base layer contacts written |
| -b | base-to-base contacts between layers written |
| -l | dumps the base pairs file, which can be edited and then included in a rerun |
| -n | requests no kinemage output |
| -s | list each side of each layer in output, lists both A->B & B->A |
e-mail:
J. Michael Word or
David C. Richardson
URL: http://kinemage.biochem.duke.edu
Biochemistry Department
Duke University
Durham, NC USA 27710