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GNRA tetraloop

Suitename

Suitename is a new C program that supports the ROC RNA Ontology Consortium consensus RNA backbone nomenclature and conformer-list development (see our RNA backbone rotamer section.

From dihedral-angle input for a specific RNA structure (usually from Dangle), Suitename categorizes the RNA backbone geometry of each suite (the sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging to one of the 53 defined conformer bins. The output is either a one-line-per-suite report, or a linear conformer string (as shown below the image here) in one of several variant formats. Suitename is built into MolProbity, producing entries in the multi-criterion chart for an RNA model and also a suitestring file. The Suitename code is made available here for bulk or individual command-line use.

Download either one of the pre-compiled binaries or compile the sourcecode on your computer. Then type "suitename -help" to get started in using the program.

Note: suitename continues to evolve and later code is available through the RLab svn server.


Platform Version Release date Download size Program
(click to download)
Linux 0.3 28-Jun-07 19 (Kb) download arrow suitename.0.3.070628.linuxi386.gz
Windows(1) 0.3 28-Jun-07 20 (Kb) download arrow suitename.0.3.070628.win.exe.zip
Mac OSX
univ.bin.
0.3 28-Jun-07 42 (Kb) download arrow suitename.0.3.070628.macOSX.ub.zip
Source code 0.3 28-Jun-07 29 (Kb) download arrow suitename.0.3.070628.src.tgz