Home-Page Site-Map


RNA Backbone: Consensus All-angle Conformers and Modular String Nomenclature

Jane S. Richardson, Bohdan Schneider, Laura W. Murray, Gary J. Kapral, Robert M. Immormino, Jeffrey J. Headd, David C. Richardson, Daniela Ham, Eli Hershkovits, Loren Dean Williams, Kevin S. Keating, Anna Marie Pyle, David Micallef, John Westbrook, and Helen M. Berman (2008) "RNA Backbone: Consensus All-angle Conformers and Modular String Nomenclature (an RNA Ontology Consortium contribution)" RNA 12 , 533-541.


Contents Filename / link
(click to download or go to)
HTML version of the conformers table, which has links to show an interactive kinemage display of a representative example of the conformer. Also available on this page is a tar file of all kinemages of the examples, for download and use locally. conformer table online
Excel spreadsheet tabulating summary statistics (#observations, means and sigmas for dihedrals) for the conformers download arrow suppTable_clusterMeans070726.xls
text file listing the structures comprising the database for this work download arrow RNA05_list.txt
9D kinemage file (for display use Mage (vers. 6.44 or later) or KiNG (vers 2.12 or later)) of the consensus clusters for C2'-C2' download arrow 9dRNA_22_consensus.kin
9-dimensional kinemage file of the consensus clusters for C2'-C3' download arrow 9dRNA_23_consensus.kin
9-dimensional kinemage file of the consensus clusters for C3'-C3' download arrow 9dRNA_33_consensus.kin
9-dimensional kinemage file of the consensus clusters for C3'-C2' download arrow 9dRNA_32_consensus.kin
zip archive of all of the above download arrow RNAROC2007_suppInfo.zip