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1. MolProbity AnalysisAdd H, calculate contacts, and assess geometry by running the MolProbity web service |
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2. Rebuilding in KiNGLocal backbone adjustments using KiNG |
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Crystallographers can also get MolProbity-style validation in the Phenix crystallographic software system. Rebuilding with all-atom contact analysis and rotamer selection in Coot improves refinement in Phenix. |
![]() 2011Read_VTF_Struct19 |
• Report of the wwPDB X-ray Validation Task Force: |
![]() 2010Chen_molProb_ActaD66 |
• Latest MolProbity reference: |
![]() 2006DavisStr14 |
• Backrubs: |
![]() 2005ArendallJFSG6 |
Arendall, Tempel, Richardson, Zhou, Wang, et al. (2005) "A test of enhancing model accuracy in high-throughput crystallography." Struct Funct Genomics 6:1-11. |
![]() 2003LovellPsfg50 |
Lovell, Davis, Arendall, de Bakker, Word, et al. (2003) "Structure Validation by Cα Geometry: φ,ψ and Cβ Deviation." Proteins: Struct Funct Genetics 50: 437-450. |
![]() 2000LovellPsfg40 |
Lovell, Word, Richardson, & Richardson (2000) "The Penultimate Rotamer Library." Proteins: Struct Funct Genetics 40: 389-408. |
![]() 1999WordB |
• H addition and Asn/Gln/His flips: |