EMBL-Hamburg 2007 : All-Atom Contact Analysis

	1. MolProbity Analysis Add H, calculate contacts, and assess geometry by running the MolProbity web service
	2. Rebuilding in KiNG Local backbone adjustments using KiNG
	3. All-atom Contact Tools in Coot Rebuilding with all-atom contact analysis along with rotamer selection in Coot
	4. Optional further exercises try one or more of these

(2.2MB) 2007DavisNAR35	Davis, Leaver-Fay, Chen, Block, Kapral, Wang, Murray, Arendall, Snoeyink, Richardson & Richardson (2007) "MolProbity: all-atom contacts and structure validation for proteins and nucleic acids" Nucleic Acids Research 35(Web Server Issue):W375-383
(0.5MB) 2006DavisStr14	Davis, Arendall, Richardson, & Richardson (2006) "The backrub motion: How protein backbone shrugs when a sidechain dances" Structure 14: 265-274
(0.4MB) 2005ArendallJFSG6	Arendall, Tempel, Richardson, Zhou, Wang, Davis, Liu, Rose, Carson, Luo, Richardson, & Wang (2005) "A test of enhancing model accuracy in high-throughput crystallography." Struct Funct Genomics 6:1-11.
(0.8MB) 2003LovellPsfg50	Lovell, Davis, Arendall, de Bakker, Word, Prisant, Richardson, & Richardson (2003) "Structure Validation by Cα Geometry: φ,ψ and Cβ Deviation." Proteins: Struct Funct Genetics 50: 437-450.
(0.3MB) 2000LovellPsfg40	Lovell, Word, Richardson, & Richardson (2000) "The Penultimate Rotamer Library." Proteins: Struct Funct Genetics 40: 389-408.
(804KB) 1999WordB	Word, Lovell, Richardson, & Richardson (1999) "Asparagine and Glutamine: Using Hydrogen Atom Contacts in the Choice of Side-chain Amide Orientation." JMB 285: 1735-47.

M2M Crystallography Course -- EMBL Hamburg :: 2007